BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0181.p (658 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 350 2e-97 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 340 2e-94 gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 340 2e-94 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 316 4e-87 gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis tra... 310 2e-85 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 350 bits (899), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 225/484 (46%), Positives = 312/484 (64%), Gaps = 15/484 (3%) Query: 168 WYYVPKQTRRVFVSEPHSYSTGGKPLMIASINAPILVKEKFAGVASVIFQLAKLSDILRS 227 WY + + ++ P+ +T GK ++ + P+ K V QL + + Sbjct: 120 WYKQAVEAGKPVLTAPYVDATTGK--LVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAG 177 Query: 228 IKSIDGVSLSLISNSGVYASHPDPDRLGKKADELPEAATAS----IRKGESYEYHDASGA 283 IK ++ GV +HP+ + K L + +A +++G S G Sbjct: 178 IKPTPSSFAFIVGKDGVIITHPNKELALKPVSSLDQTLSAQSLAGMKQGGSATI---GGI 234 Query: 284 AHLL--EPLRLYPEMAPWAIQLSFQPSVVTAEANRLMIHSLILALVCSVVTAVVMVIALS 341 +LL +P+ W++ ++ T LM S +LA++ V +A+++ ++ Sbjct: 235 RYLLFTQPI----ANTDWSLVVALDYREATHAIGALMTLSTVLAVLAIVASAILLSYTIT 290 Query: 342 RITRPLRTLGEAMTNLANGDAELEARLEVRGKDELAKIAAGFNGFVEKIQQVLLQVRDSA 401 R+ R L + AM +A+GD +L RL+ GKDELA+I+ FN F +KI + LL +R ++ Sbjct: 291 RLLRRLGVVRNAMEEIASGDGDLTRRLDTSGKDELAQISRAFNHFADKISRTLLDIRRAS 350 Query: 402 GSVAIAGAEISRGNFDLSARTEQQAGALEETAAAMEELTSTVKKNADNAQYANELASTAS 461 SV ++ +EI+ GN DLSARTEQQAG+LEETA+AMEELTSTVK+NADNA+ AN+LA +AS Sbjct: 351 ESVKVSSSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSAS 410 Query: 462 ETARRGGVVVAEVVQTMAEIDAASRKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 521 + A GG VV +VV TM+ I+ +SRK+VDII VIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 411 DVAVHGGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGR 470 Query: 522 GFAVVATEVRTLAYRSSVAAKEIKELIGDASGKVDAGRTLVQAAGQTMDEVVASVLKVSG 581 GFAVVA+EVR+LA RS+ AAKEIK LI D+ KV+ G LV AG TM+EVV+SV +V+ Sbjct: 471 GFAVVASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTD 530 Query: 582 IVEEISVASKEQSSGIEQVNRAIVQMDDGTQQNAALVEEAAGAAASLKQQADLLVSLVGE 641 IV EIS AS+EQSSGI +V A+ QMD+ TQQNAALVE+AA AA SL++QA L ++V Sbjct: 531 IVGEISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAG 590 Query: 642 FRLE 645 F+L+ Sbjct: 591 FKLD 594 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 340 bits (872), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 184/347 (53%), Positives = 252/347 (72%), Gaps = 1/347 (0%) Query: 299 WAIQLSFQPSVVTAEANRLMIHSLILALVCSVVTAVVMVIALSRITRPLRTLGEAMTNLA 358 W + ++ + A + +++ S ++A++ +V+ A+V+ +SR+ L + A+ +A Sbjct: 273 WLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLTVVQGALEEIA 332 Query: 359 NGDAELEARLEVRGK-DELAKIAAGFNGFVEKIQQVLLQVRDSAGSVAIAGAEISRGNFD 417 +GD +L RL+ G+ DEL +I A FN FV+KI+ V++ +RD++ ++ A +I+ GN D Sbjct: 333 DGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAASRDIASGNMD 392 Query: 418 LSARTEQQAGALEETAAAMEELTSTVKKNADNAQYANELASTASETARRGGVVVAEVVQT 477 LS RTE QA +LE+TAAAME+LTS+V+ NADNA AN+L+ +AS+ A +GG +V +VVQT Sbjct: 393 LSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQGGTMVEQVVQT 452 Query: 478 MAEIDAASRKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAYRS 537 M I+A+S+K+VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LA RS Sbjct: 453 MNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 512 Query: 538 SVAAKEIKELIGDASGKVDAGRTLVQAAGQTMDEVVASVLKVSGIVEEISVASKEQSSGI 597 + AAKEIK LI D+ G+V AG V AG T+ VV SV KVS +V EI+ AS+EQS GI Sbjct: 513 ATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEITAASREQSQGI 572 Query: 598 EQVNRAIVQMDDGTQQNAALVEEAAGAAASLKQQADLLVSLVGEFRL 644 Q N A+ MD TQQNAALVE+AA A SL++QA+ L +V FRL Sbjct: 573 NQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRL 619 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 340 bits (871), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 240/554 (43%), Positives = 336/554 (60%), Gaps = 21/554 (3%) Query: 96 AMTLQTLSGSSDIVSAAVTWEPNALDGNDAEYAGKLPEHDKSGRYLPFFTKNADGSVQGE 155 A T T++ + +++A + L + Y L + DK+ FT A +G Sbjct: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTA-----FTSAA----EGL 111 Query: 156 PIIFQSTADADQWYYVPKQTRRVFVSEPHSYSTGGKPLMIASINAPILVKEKFAGVASVI 215 P + TA WY + +++P++ KP++ S AP++ + AGV + Sbjct: 112 PAGYDPTARP--WYKQAVAAGKPVLTKPYTDVATKKPMV--SFTAPVMQNGQRAGVVAAA 167 Query: 216 FQLAKLSDILRSIKSIDGVSLSLISNSGVYASHPDPDRLGKKADEL-----PEAATASIR 270 L +SD++RSI L+ G+ +HPD + K A E PE A Sbjct: 168 MFLDGVSDVVRSIHPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAA 227 Query: 271 KGESYEYHDASGAAHLLEPLRLYPEMAPWAIQLSFQPSVVTAEANRLMIHSLILALVCSV 330 ++ E GAA L++ + + + W + L+ + VTA +LI ++ ++ Sbjct: 228 DDKASEVM-LEGAAKLVKGVPI--KGTEWTLMLAMDKADVTAGLRNASRSALIALVLVAL 284 Query: 331 VTAVVMVIALSRITRPLRTLGEAMTNLANGDAELEARLEVRGKDELAKIAAGFNGFVEKI 390 V A +M + + + + L + AM NL++G+ +L RL G DE+ +I+ FN FV +I Sbjct: 285 VAAGIMSLITTAVFQRLSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQI 344 Query: 391 QQVLLQVRDSAGSVAIAGAEISRGNFDLSARTEQQAGALEETAAAMEELTSTVKKNADNA 450 +L VR S+ +V I+ EI+ GN DLSARTEQQAGALEETA+AMEELTSTV++N++NA Sbjct: 345 TGILQDVRRSSDTVKISSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENA 404 Query: 451 QYANELASTASETARRGGVVVAEVVQTMAEIDAASRKVVDIIGVIDGIAFQTNILALNAA 510 + ANELA AS+ A +GG VV VV TM I+A+SR++ DII VIDGIAFQTNILALNAA Sbjct: 405 RRANELAGNASKIAAQGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAA 464 Query: 511 VEAARAGEQGRGFAVVATEVRTLAYRSSVAAKEIKELIGDASGKVDAGRTLVQAAGQTMD 570 VEAARAGEQGRGFAVVA+EVR+LA RS+ AAKEIK LI + KV G LV AGQTM+ Sbjct: 465 VEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTME 524 Query: 571 EVVASVLKVSGIVEEISVASKEQSSGIEQVNRAIVQMDDGTQQNAALVEEAAGAAASLKQ 630 ++VAS+ VS IV EI+ AS EQ+ GI++VN AI +D+GTQQNAALVE+AA AA SL+ Sbjct: 525 QIVASIRDVSVIVSEIAHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQD 584 Query: 631 QADLLVSLVGEFRL 644 +A L LVG F++ Sbjct: 585 EAHRLSVLVGGFKM 598 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 316 bits (809), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 189/334 (56%), Positives = 243/334 (72%), Gaps = 7/334 (2%) Query: 324 LALVCS---VVTAVVMVIALSR-ITRPLRTLGEAMTNLANGDAELEARLEVRGKDELAKI 379 + L CS V+ A+++ ++R I +PL N+A GD L R+E +DE ++ Sbjct: 194 VTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGD--LTTRIEPHSRDETGQL 251 Query: 380 AAGFNGFVEKIQQVLLQVRDSAGSVAIAGAEISRGNFDLSARTEQQAGALEETAAAMEEL 439 + + +++ VR S+ A EI+ GN DLSARTEQQAG+LEETA+AMEE+ Sbjct: 252 MQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEM 311 Query: 440 TSTVKKNADNAQYANELASTASETARRGGVVVAEVVQTMAEIDAASRKVVDIIGVIDGIA 499 TSTV++NADNA+ AN++A +ASE A +GG +V VV TM EI+ +SRK+VDIIGVIDGIA Sbjct: 312 TSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIA 371 Query: 500 FQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAYRSSVAAKEIKELIGDASGKVDAGR 559 FQTNILALNAAVEAARAGEQGRGFAVVATEVR+LA RS+ AAKEIK LI D+ GKV+ G Sbjct: 372 FQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGS 431 Query: 560 TLVQAAGQTMDEVVASVLKVSGIVEEISVASKEQSSGIEQVNRAIVQMDDGTQQNAALVE 619 LV AG TM++VV+SV V+ IV EIS AS EQSSGIE++NRA+ QMD+GTQQNAALVE Sbjct: 432 ALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVE 491 Query: 620 EAAGAAASLKQQADLLVSLVGEFRLE-GASQLGA 652 +AA AA S+++QA L + F+LE GA+ + A Sbjct: 492 QAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPA 525 >gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 657 Score = 310 bits (795), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 180/346 (52%), Positives = 233/346 (67%), Gaps = 5/346 (1%) Query: 270 RKGESYEYHDASGAAHLLEPLRLYPEMAPWAIQLSFQPSVVTAEANRLMIHSLILALVCS 329 +K S Y A G +L YP W I +T E + + + L L+ Sbjct: 286 QKDGSLPYTAADGRKKIL-AFTYYPGW-HWVIAGEAAVDEITREVSSMRNLYIGLGLLFL 343 Query: 330 VVTAVVMVIALSR-ITRPLRTLGEAMTNLANGDAELEARLEVRGKDELAKIAAGFNGFVE 388 V A ++ + ++R ++RPL + +A +A+GD L RL V DE+ ++ FNG Sbjct: 344 AVLAAILTVMVNRMVSRPLDAVCQAADRIASGD--LTTRLHVHSSDEIGRLMGAFNGISM 401 Query: 389 KIQQVLLQVRDSAGSVAIAGAEISRGNFDLSARTEQQAGALEETAAAMEELTSTVKKNAD 448 + +V+ VR + A +EI+ GN +LS RTEQQAGALEETA+AMEELTSTVK+NA Sbjct: 402 GLSEVVSSVRAGTEEINTAASEIASGNLNLSVRTEQQAGALEETASAMEELTSTVKQNAA 461 Query: 449 NAQYANELASTASETARRGGVVVAEVVQTMAEIDAASRKVVDIIGVIDGIAFQTNILALN 508 NA+ A+EL+S ASE A GG VV +VVQTM I+++S+++VDII VIDGIAFQTNILALN Sbjct: 462 NAEQADELSSAASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQTNILALN 521 Query: 509 AAVEAARAGEQGRGFAVVATEVRTLAYRSSVAAKEIKELIGDASGKVDAGRTLVQAAGQT 568 AAVEAARAGEQGRGFAVVATEVRTLA RS+ AAKEIKELI + V G LV AG T Sbjct: 522 AAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQLVTQAGNT 581 Query: 569 MDEVVASVLKVSGIVEEISVASKEQSSGIEQVNRAIVQMDDGTQQN 614 M++VV+SV +VS ++ EI+ AS+EQS GI+Q+NRAI QMD+ TQQN Sbjct: 582 MNDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQN 627 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,527,668 Number of extensions: 56543 Number of successful extensions: 482 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 336 Number of HSP's successfully gapped: 70 Length of query: 658 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 567 Effective length of database: 1,188,985 Effective search space: 674154495 Effective search space used: 674154495 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)