BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0180.p
         (447 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309576|ref|YP_003773668.1| prolidase [Herbaspirillum serop...   119   4e-28

>gi|300309576|ref|YP_003773668.1| prolidase [Herbaspirillum
           seropedicae SmR1]
          Length = 409

 Score =  119 bits (299), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 192/431 (44%), Gaps = 43/431 (9%)

Query: 1   MAKTLFKNVNIFDGTGTDPFIG------DVLVENNRISQVKSGAGSIDVAGAEVIDGKGR 54
           M K L K  N+ D     P +G      DVL++ +RI  V   A  ++V+GA VID  G+
Sbjct: 1   MTKILLKGGNVLD-----PALGSLFPRHDVLIDKDRIVDVS--ATPLEVSGARVIDVAGK 53

Query: 55  FLMPGMTEGHTHFSWNDQPTLSAIQMMPPEEHILWCVRVAKRYLDMGWTSALGAAAAKPR 114
            +MPG+ + H H        L    + P     +  + + +  L+ G+TS   A  A   
Sbjct: 54  TVMPGLIDCHVHV-LASLANLGLNALQPGSLTSIRALPIVEAMLNRGFTSVRDAGGA--- 109

Query: 115 LDVVLRNAINAGEFPGPRYLAGSQEITTIGALGD-----NTLP--HLPYPELSFGSVCSG 167
            D  L  AI  G  PGPR     + ++  G  GD     + L      +   +   V  G
Sbjct: 110 -DWGLAQAIAIGLVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVADG 168

Query: 168 PEEIRRSARTFIKYGVDHLKINLSGEYIAGIPAEMSP-----FSEEEVAMLASEAKRFGK 222
            + +R +AR  ++ G   +KI  SG    G+ +   P     +SE+E+  + +EA+    
Sbjct: 169 VDAVRLAAREELQKGATQIKIMASG----GVASPTDPIGNTQYSEDEIRAIVAEAEAAQT 224

Query: 223 RVAVHARSAESVKQCVRHGLELIFHASFADEEALDMLEANKDKHFVVPGLGWLVRTSFHA 282
            V  HA +  ++ + VR G+  I H +  D +A  ++  ++   FVVP L      +   
Sbjct: 225 YVMAHAYTGRAIARAVRCGVRTIEHGNLVDAQAARVM--HEHGAFVVPTLVTYDSLARDG 282

Query: 283 SEYGITPEIAKTMGYTRELEIASETLSKMHKRGIRILPGGDYGFAWMPHGTNANDLQYLV 342
           +  G+ P+    +   R  +   ++L    + G+++  G D     M H   + +     
Sbjct: 283 ARLGLPPDSVAKIESVR--QAGRDSLRIYAEHGVQMGFGSDL-LGEM-HQDQSQEFIIRA 338

Query: 343 DYVGMTKKEALIAATKWGGEIMMRGNEQGQILPGYLADLVLVNENPLNNLAVLV-DPKQI 401
           + +G    E + +AT     I+ R  E G +  G LADL++V+ NPL ++ +L    + +
Sbjct: 339 EILG--NLETIRSATSIAAAILQREGELGTVRAGALADLIVVDGNPLQDITLLTGQGEHL 396

Query: 402 ALVMIDGSIHK 412
            LVM  G IH+
Sbjct: 397 CLVMQAGHIHR 407


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,440,032
Number of extensions: 60585
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,203,190
Effective search space: 431945210
Effective search space used: 431945210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)