BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0175.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum serope...   170   2e-43
gi|300309898|ref|YP_003773990.1| major facilitator superfamily p...   147   2e-36

>gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 412

 Score =  170 bits (430), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 10/355 (2%)

Query: 21  CGIAVANVYLCQPLLPAISASFSITSEQAGRVATAAQIGYALGILLVVPLADRVSVTKLI 80
            G+AVA++Y  QP+L  ++     +    G V  + Q+GYALGILL+ PL DR    ++I
Sbjct: 35  AGLAVASLYYSQPMLGVLADDIGASERAVGMVPMSTQLGYALGILLLAPLGDRYDRRRII 94

Query: 81  RVLLALSAFFLLSAAAAPNIEILTLASLAITVATVIPQILIPIAVSTSSPEKAGSVVGTL 140
            +  A+    LL A AA  +  L  ASLA+ +   + Q ++P A S +  +  G VVGT+
Sbjct: 95  LIKAAILTAALLLAGAASGVGALLAASLAVGLTATLAQDIVPAAASLAPEQSRGRVVGTV 154

Query: 141 QSGLIAGILLSRTFSGLIAQYSGSWRFSYVAAAACTVVLLLTLPRALPKRELPPVNISYF 200
            +GL+ GILLSR  SG +A++ G WR  +VAAA    ++ L   R LP+   P  ++SY 
Sbjct: 155 MTGLLLGILLSRVVSGFVAEHFG-WRAMFVAAAVSIALIGLAAWRGLPRFH-PTTHLSYG 212

Query: 201 ALIGSLPGLVSKWTHLRLSALLGALVFGAFSAFWATLAFHLAEQPFGYGSAEAGLFGLWG 260
           AL+ SL  L  K   LR +AL   L+   FSAFW+TLA  L   PF  GSA AG FGL G
Sbjct: 213 ALMASLATLFKKHGALRRAALAQGLLSVGFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAG 272

Query: 261 AAGALIAPLFGKIADRHGPSILNVISITAAALAFAC------FAGYGNIYVAAIVIGVNF 314
           AAGAL APL G+I+D+ GP ++  + +  A ++FA       F+  G + + A V  V F
Sbjct: 273 AAGALAAPLAGRISDKKGPELVTRLGVGLAIVSFAAMALSPWFSTQGQLVLLA-VAAVGF 331

Query: 315 LDFANQAGQIANQTRIFKLDPTARARLNTVYMVATFGGGAVGSTLGSYAWSKHQW 369
            D   QA  +A+QT ++ ++P AR+RLN +  V  F G A G+ LGS   ++  W
Sbjct: 332 -DLGVQATLVAHQTIVYSIEPGARSRLNAILFVGMFIGMAAGAALGSLVLAQWGW 385


>gi|300309898|ref|YP_003773990.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score =  147 bits (370), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 186/361 (51%), Gaps = 3/361 (0%)

Query: 20  ACGIAVANVYLCQPLLPAISASFSITSEQAGRVATAAQIGYALGILLVVPLADRVSVTKL 79
           A G++VANVY  QPLL A+S  F I+    G V TA Q+G AL +LL+VPL D+V    L
Sbjct: 19  ASGLSVANVYYAQPLLDALSDDFKISQAAVGGVVTATQLGCALALLLLVPLGDKVPRKML 78

Query: 80  IRVLLALSAFFLLSAAAAPNIEILTLASLAI-TVATVIPQILIPIAVSTSSPEKAGSVVG 138
           + + L      L++   A +  +L    LA+  + T + Q LI  A S +  ++ G VVG
Sbjct: 79  MGIQLLALVCALVTVGLARSSYVLLAGMLAVGLLGTAMTQGLIAYAASAAGEDERGRVVG 138

Query: 139 TLQSGLIAGILLSRTFSGLIAQYSGSWRFSYVAAAACTVVLLLTLPRALPKRELPPVNIS 198
             QSG+  G+LLSR FSG ++  +G WR  Y+ AA   + L   L + LP   +    + 
Sbjct: 139 AAQSGVFIGLLLSRVFSGAVSDVTG-WRGVYLCAAIMMLCLAWPLWKRLPAIPVQADGLR 197

Query: 199 YFALIGSLPGLVSKWTHLRLSALLGALVFGAFSAFWATLAFHLAEQPFGYGSAEAGLFGL 258
           Y  LI S+  L+     L++  +L  L+F AF+ FW+ L   L+  P+ +     G FGL
Sbjct: 198 YLTLIKSMWCLLRDDKVLQVRGVLAMLMFAAFNVFWSALVLPLSASPYHFSHTVIGAFGL 257

Query: 259 WGAAGALIAPLFGKIADRHGPSILNVISITAAALAFACFAGYGNIYVAAIVIGVNFLDFA 318
            G  GAL A   G+ +D+      + +S+    LA+   +      + A+V G+  LD  
Sbjct: 258 VGVIGALAASKAGRWSDQGHAQRTSAVSLAVLLLAWWPLS-LMESSLWALVAGIILLDLG 316

Query: 319 NQAGQIANQTRIFKLDPTARARLNTVYMVATFGGGAVGSTLGSYAWSKHQWSGVWMTGFA 378
            QA  + NQ+ IF+  P A +RL  VYM+    G  +G+   +  ++   W GV   G A
Sbjct: 317 GQALHVTNQSLIFRSSPQAHSRLVGVYMLFYAVGSGLGAISTTAIYAARGWQGVCFLGAA 376

Query: 379 L 379
           +
Sbjct: 377 V 377


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,074,020
Number of extensions: 40066
Number of successful extensions: 286
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 3
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)