BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0167.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway...   189   2e-49

>gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway of
           phenol degradation protein [Herbaspirillum seropedicae
           SmR1]
          Length = 316

 Score =  189 bits (481), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 162/299 (54%), Gaps = 13/299 (4%)

Query: 48  LNLGETSFMDGFSRTD-PGWAYLPALRYANGNAIKDGSGRDSAAFKDPRIDSVTLINHLS 106
           +N+G TSF DG      PG+ ++  L Y+    + D +G          I     +    
Sbjct: 28  VNMGGTSFFDGAPLPGGPGFYFVEYLTYSKATKLVDNNGNRLGFPATQDISVFAPVTQFI 87

Query: 107 YTSP-IRIGNATLGLNALLP-VVSLDGRFGQPGATLTGGGTSIGDMTISPSLQFDPVMGA 164
           Y  P  + GN  LG   L+P V S     G   A L G  T IGD++   S+Q+DP+MGA
Sbjct: 88  YVPPGAKFGNKQLGFQVLVPWVASAKVDDGANNAVLRGN-TGIGDISAGVSVQYDPIMGA 146

Query: 165 AGPLYSQRLEFSFLLPTGHYNRNNDLNQGAGYYSINPFWAATLLPTPRWEISWRLHYLYN 224
            GPLY+QR E  F+LPTG Y+RN  +N G+  ++ +P+WA TL  +     SWRLHYL+N
Sbjct: 147 QGPLYAQRFELQFILPTGAYDRNATVNPGSNTWAFDPYWAGTLWASQNLSFSWRLHYLWN 206

Query: 225 FKNTQPAGSAPLAYQGQSVRDTQAGQAAWINLSTSYEVMRDVRLGINSYYFKQLTDSKTN 284
            +N     +AP A  G +V  TQAGQAA  N +  Y +     +G   Y+ +Q+TD+K N
Sbjct: 207 ARN-----NAPSAAFGNNVSSTQAGQAAHANFAAEYVLNPTWTVGAAGYWLQQVTDTKVN 261

Query: 285 GTDMADSREQVLGVGLGAMFTIHRGDKRDALWINSYTESHVRNRTRNSLVVQARYAYEF 343
           G D++  RE+V+G+G  AM    R  +RD L+ N Y E  VRNR  NS   Q RY + F
Sbjct: 262 GADVSGRRERVVGLGPAAMM---RLSERDLLFFNVYQEFAVRNRAENSK-FQIRYDHHF 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,241,413
Number of extensions: 59154
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)