BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0150.p
         (348 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase ...   120   2e-28
gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase ...    69   6e-13

>gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase
           catalytic subunit [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 153/325 (47%), Gaps = 31/325 (9%)

Query: 1   LSHLLSVAQFSRESSERLFALADIMQPVARRR-KVSRVLEGAVLANLFFEASTRTRLSFA 59
           L HLL++    R     +   A     +  R  K   ++ G  + NLFFE STRTR +F 
Sbjct: 12  LQHLLTIEGLPRSILTHILDTASSFVSIGDREVKKVPLMRGKSVFNLFFENSTRTRTTFE 71

Query: 60  SAFMRLGGSVCDTTGFTYSSMAKGESIGDTSRTVSG-YADVLVVRHPEQGSVAQFAS--- 115
            A  RL   V +      SS +KGES+ DT   ++  +AD+ VVRH + G+    A    
Sbjct: 72  IASKRLSADVINLN-IQASSTSKGESLLDTIDNLAAMHADMFVVRHAQSGAPFLIAKHLI 130

Query: 116 ---ATHVPVINGGDGAGEHPTQALIDLYTI---QREFSRLGKLIDGSHIVITGDLKYGRT 169
               +HV V+N GDG   HPTQ L+D+YTI   +++F+ L        + I GD+ + R 
Sbjct: 131 DTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNL-------RVAIVGDILHSRV 183

Query: 170 AHSLVQLLSLYRRIRFTLVSPPSLEMPEEITQLIALRGHDVEVSDSLARALQGADVIYTT 229
           A S +  L+         + P +L +P  + Q+       V V  ++   L+  DVI   
Sbjct: 184 ARSDIHALTTLGVPEVRAIGPRTL-LPSGLEQM------GVRVFHNMEEGLKDVDVIIML 236

Query: 230 RIQRERLTDESIDSFLSIFEINKKVVDQ--YCKNDVIVMHPLPRDSRPGAYDLNIDLDGD 287
           R+Q ER++   + S    F+      ++    K D IVMHP P +      +++  +   
Sbjct: 237 RLQNERMSGALLPSAQEFFKSYGLTPERLALAKPDAIVMHPGPMNR---GVEIDSAVADG 293

Query: 288 ARLAIFRQTDNGVPIRMAIFATILG 312
           A+  I  Q   G+ +RMA+ + + G
Sbjct: 294 AQAVILPQVTFGIAVRMAVMSIVAG 318


>gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 1   LSHLLSVAQFSRESSERLFALADIMQPVARRRKVSRVLEGAVLANLFFEASTRTRLSFAS 60
           + H L  + F+ +  E +   + +++   +  +    L    L  +F + STRTRLSF +
Sbjct: 3   IKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSFEA 62

Query: 61  AFMRLGGSVCDTTGFTYSSMAKGESIGDTSRTVSGYADVLVVRHPEQGSVAQFASATHVP 120
              ++GG+         S + +GE + D ++ +S   DV+++R   Q  + +FA  + VP
Sbjct: 63  GMHQMGGAAIYLNTRD-SQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRVP 121

Query: 121 VINGGDGAGEHPTQALIDLYT-IQREFSRLGKLI 153
           VING     +HP Q L D++T I+   S  GK++
Sbjct: 122 VINGLTNE-QHPCQVLADVFTYIEHHGSIQGKIV 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,056,728
Number of extensions: 44158
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,212,660
Effective search space: 317716920
Effective search space used: 317716920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)