BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0147.p
         (381 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309898|ref|YP_003773990.1| major facilitator superfamily p...   591   e-170
gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum serope...   162   4e-41

>gi|300309898|ref|YP_003773990.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score =  591 bits (1524), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 314/379 (82%), Positives = 343/379 (90%)

Query: 1   LLLLFALASGLSVANVYYAQPLLDALSQDFRINQSAIGGVVTATQLGCALALLFLVPLGD 60
           LLLLFA+ASGLSVANVYYAQPLLDALS DF+I+Q+A+GGVVTATQLGCALALL LVPLGD
Sbjct: 12  LLLLFAIASGLSVANVYYAQPLLDALSDDFKISQAAVGGVVTATQLGCALALLLLVPLGD 71

Query: 61  KVARKKLTGLQLSGLICALVTVGLARTSCTLLAGMLAVGLLGTAMTQGLIAYAASVASES 120
           KV RK L G+QL  L+CALVTVGLAR+S  LLAGMLAVGLLGTAMTQGLIAYAAS A E 
Sbjct: 72  KVPRKMLMGIQLLALVCALVTVGLARSSYVLLAGMLAVGLLGTAMTQGLIAYAASAAGED 131

Query: 121 ERGRVVGAAQTGVFIGLLLSRVFSGAISDVTGWRGVYFCAALMMLLLAWPLWRGLPAVPV 180
           ERGRVVGAAQ+GVFIGLLLSRVFSGA+SDVTGWRGVY CAA+MML LAWPLW+ LPA+PV
Sbjct: 132 ERGRVVGAAQSGVFIGLLLSRVFSGAVSDVTGWRGVYLCAAIMMLCLAWPLWKRLPAIPV 191

Query: 181 SSNGLSYARLLASMWSLLRHDKVLQVRGTLAMLMFASFNIFWSALVLPLSASPYHFSHTA 240
            ++GL Y  L+ SMW LLR DKVLQVRG LAMLMFA+FN+FWSALVLPLSASPYHFSHT 
Sbjct: 192 QADGLRYLTLIKSMWCLLRDDKVLQVRGVLAMLMFAAFNVFWSALVLPLSASPYHFSHTV 251

Query: 241 IGAFGLVGVIGALAASRAGRWADKGHAQRTSAAALSLLLLAWWPLSLMDGSLWALVAGII 300
           IGAFGLVGVIGALAAS+AGRW+D+GHAQRTSA +L++LLLAWWPLSLM+ SLWALVAGII
Sbjct: 252 IGAFGLVGVIGALAASKAGRWSDQGHAQRTSAVSLAVLLLAWWPLSLMESSLWALVAGII 311

Query: 301 LLDLGGQALHVTNQSLILRSSPGAHGRLIGVYMLFYTVGSGLGALSTTVVYAAHGWRGVC 360
           LLDLGGQALHVTNQSLI RSSP AH RL+GVYMLFY VGSGLGA+STT +YAA GW+GVC
Sbjct: 312 LLDLGGQALHVTNQSLIFRSSPQAHSRLVGVYMLFYAVGSGLGAISTTAIYAARGWQGVC 371

Query: 361 LLGAAVSFIALLFWLTTCR 379
            LGAAVSFIALLFWL   R
Sbjct: 372 FLGAAVSFIALLFWLMARR 390


>gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 412

 Score =  162 bits (410), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 203/354 (57%), Gaps = 9/354 (2%)

Query: 9   SGLSVANVYYAQPLLDALSQDFRINQSAIGGVVTATQLGCALALLFLVPLGDKVARKKLT 68
           +GL+VA++YY+QP+L  L+ D   ++ A+G V  +TQLG AL +L L PLGD+  R+++ 
Sbjct: 35  AGLAVASLYYSQPMLGVLADDIGASERAVGMVPMSTQLGYALGILLLAPLGDRYDRRRII 94

Query: 69  GLQLSGLICALVTVGLARTSCTLLAGMLAVGLLGTAMTQGLIAYAASVASESERGRVVGA 128
            ++ + L  AL+  G A     LLA  LAVGL  T + Q ++  AAS+A E  RGRVVG 
Sbjct: 95  LIKAAILTAALLLAGAASGVGALLAASLAVGLTAT-LAQDIVPAAASLAPEQSRGRVVGT 153

Query: 129 AQTGVFIGLLLSRVFSGAISDVTGWRGVYFCAALMMLLLAWPLWRGLPAVPVSSNGLSYA 188
             TG+ +G+LLSRV SG +++  GWR ++  AA+ + L+    WRGLP    +++ LSY 
Sbjct: 154 VMTGLLLGILLSRVVSGFVAEHFGWRAMFVAAAVSIALIGLAAWRGLPRFHPTTH-LSYG 212

Query: 189 RLLASMWSLLRHDKVLQVRGTLAM-LMFASFNIFWSALVLPLSASPYHFSHTAIGAFGLV 247
            L+AS+ +L +    L+ R  LA  L+   F+ FWS L + L  +P+H    A GAFGL 
Sbjct: 213 ALMASLATLFKKHGALR-RAALAQGLLSVGFSAFWSTLAVMLHGAPFHLGSAAAGAFGLA 271

Query: 248 GVIGALAASRAGRWADKGHAQRTSAAALSLLLLAWWPLSL-----MDGSLWALVAGIILL 302
           G  GALAA  AGR +DK   +  +   + L ++++  ++L       G L  L    +  
Sbjct: 272 GAAGALAAPLAGRISDKKGPELVTRLGVGLAIVSFAAMALSPWFSTQGQLVLLAVAAVGF 331

Query: 303 DLGGQALHVTNQSLILRSSPGAHGRLIGVYMLFYTVGSGLGALSTTVVYAAHGW 356
           DLG QA  V +Q+++    PGA  RL  +  +   +G   GA   ++V A  GW
Sbjct: 332 DLGVQATLVAHQTIVYSIEPGARSRLNAILFVGMFIGMAAGAALGSLVLAQWGW 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,055,747
Number of extensions: 40433
Number of successful extensions: 310
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 4
Length of query: 381
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,207,925
Effective search space: 355129950
Effective search space used: 355129950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)