BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0128.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313714|ref|YP_003777806.1| small-conductance mechanosensit...   278   2e-76

>gi|300313714|ref|YP_003777806.1| small-conductance mechanosensitive
           channel protein [Herbaspirillum seropedicae SmR1]
          Length = 193

 Score =  278 bits (711), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/195 (76%), Positives = 167/195 (85%), Gaps = 2/195 (1%)

Query: 1   MNRVLQSIHDNLPQWMADWFDVLVPATEVVLIFLLALAIMRVARSVMARIARTYGLPATA 60
           M++ LQSIHD LPQW+ADWFDVLVP  EV+LI L ALAIMRVAR ++ R+A TYG P  A
Sbjct: 1   MSKFLQSIHDGLPQWLADWFDVLVPTAEVILIVLGALAIMRVARMLIGRLALTYGFPNKA 60

Query: 61  VMLTQRVLGFFIYGGAMLWALERMGVSGAVLWSAFTGFAAVGAVAFFAVWSVLSNLFCAI 120
             LTQRVLGFF+YGGA+LWALERMGVS A LWSAFTGFAAVGAVAFFA WSVLSNLFCAI
Sbjct: 61  AALTQRVLGFFVYGGALLWALERMGVSSAALWSAFTGFAAVGAVAFFAAWSVLSNLFCAI 120

Query: 121 LIFTTSPFRVGDLIEVLEGGDKPGVKGRVLDINLVYTTLLEEGPEQEAKTTLQLPNSMFF 180
           LI+TT PFRVGD+IEVLEGGDKPG+KGRVLDINLVYTTL EE   +  +TTLQLPNS+FF
Sbjct: 121 LIYTTQPFRVGDVIEVLEGGDKPGLKGRVLDINLVYTTLAEE--HEGGETTLQLPNSLFF 178

Query: 181 QRIVRRWNEEGGVEF 195
           QRIVRRW++  G  F
Sbjct: 179 QRIVRRWSDGSGSLF 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 574,419
Number of extensions: 20822
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)