BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0127.p (1078 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance ... 1941 0.0 gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump pr... 275 1e-74 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 273 6e-74 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 271 2e-73 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 268 1e-72 >gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance cation efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1073 Score = 1941 bits (5029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 970/1056 (91%), Positives = 1016/1056 (96%), Gaps = 4/1056 (0%) Query: 1 MFERIIRFAIEHRWLVLLAVLGMGAYGVYSYQKLPIDAVPDITNVQVQINTAAPGYSPLE 60 MFERIIRFAIEHRWLVLLAVLGMGAYGVYSYQKLPIDAVPDITNVQVQINT+APGYSPLE Sbjct: 1 MFERIIRFAIEHRWLVLLAVLGMGAYGVYSYQKLPIDAVPDITNVQVQINTSAPGYSPLE 60 Query: 61 TEQRISYPIETVMSGLPHLEQVRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQQARSQ 120 EQRISYPIET+MSGLP+LEQVRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQ ARSQ Sbjct: 61 AEQRISYPIETLMSGLPNLEQVRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQLARSQ 120 Query: 121 LPPGIDPGMGPISTGLGEIYLWTVEAREDARKADGTPYTATDLREIQDWVIKPQLRLVPG 180 LPPGIDPGMGPISTGLGEIYLWTVE+R+DARK DGTPYTATDLREIQDWVIKPQLRLVPG Sbjct: 121 LPPGIDPGMGPISTGLGEIYLWTVESRDDARKPDGTPYTATDLREIQDWVIKPQLRLVPG 180 Query: 181 VTEINTIGGFAREYLVAPSAEKLASYGMTMDTVVKALEKNNNNVGAGYIERRGEQYLIRA 240 VTEINTIGGFA+EYLVAPSAEKLASYGMTMDT++KALEKNN+NVGAGYIERRGEQYLIRA Sbjct: 181 VTEINTIGGFAKEYLVAPSAEKLASYGMTMDTIIKALEKNNSNVGAGYIERRGEQYLIRA 240 Query: 241 PGQVGSTEDIGNIVLANVKGVPIRVRDVAEVGIGQELRTGAATENGREVVLGTVFMLIGE 300 PGQV S +DIGNIVLANVKGVPIR+RDVAEV IG+ELRTGAATENGREVVLGTVFMLIGE Sbjct: 241 PGQVASIDDIGNIVLANVKGVPIRIRDVAEVEIGRELRTGAATENGREVVLGTVFMLIGE 300 Query: 301 NSRKVSQAVDKKMREINRTLPEGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFV 360 NSRKVSQAV +KM EINR+LP+GVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFV Sbjct: 301 NSRKVSQAVARKMEEINRSLPKGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFV 360 Query: 361 FLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIIIDGAVVIVENCVRR 420 FLGNIRAAIITA VIPLAMLFTFTGMVSNKVSANLLSLGALDFGIIIDGAVVIVENCVRR Sbjct: 361 FLGNIRAAIITAMVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIIIDGAVVIVENCVRR 420 Query: 421 LAHAQQHHGRTLTRSERFHEVFAAAREARRPLLFGQLIIMIVYLPMFALTGVEGKMFTPM 480 LAHAQ HHGRTLTRSERFHEVFAAA+EARRPL+FGQLIIMIVYLPMFALTGVEGKMFTPM Sbjct: 421 LAHAQAHHGRTLTRSERFHEVFAAAKEARRPLIFGQLIIMIVYLPMFALTGVEGKMFTPM 480 Query: 481 AFTVVAALVGAMILSVTFIPAAIALFIGERVAEKENVMMAWAKRLYEPMLKRIMENKAVV 540 AFTVVAAL+GAMILSVTFIPAAIALFIGE+VAEKEN++M WAKRLYEPMLK IMENK VV Sbjct: 481 AFTVVAALIGAMILSVTFIPAAIALFIGEKVAEKENILMLWAKRLYEPMLKTIMENKPVV 540 Query: 541 LTFAGALIVVCGAVATRLGTEFVPSLNEGDMAVQALRIPGTSLSQSLEMQKQIERTLKQT 600 LTFAGALI+VCG VA+RLG+EFVPSLNEGDMA+QALRIPGTSLSQSLEMQKQIE+TLKQ Sbjct: 541 LTFAGALILVCGVVASRLGSEFVPSLNEGDMAIQALRIPGTSLSQSLEMQKQIEKTLKQK 600 Query: 601 FPEIERVFARTGTAEVASDPMPPNISDGYIMLKPQDQWPQPRKTHEELLAAIQSEVEKIP 660 FPE+ERVFARTGTAEVASDPMPPNISDGYIMLKPQ+QWP+P+K+ EELL AIQ EV KIP Sbjct: 601 FPEVERVFARTGTAEVASDPMPPNISDGYIMLKPQEQWPEPKKSREELLEAIQDEVAKIP 660 Query: 661 GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDMKVLNETAARISAVLEKIPGATEVKIE 720 GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDMKVLN+TA++ISAVLEKIPGATEVKIE Sbjct: 661 GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDMKVLNDTASKISAVLEKIPGATEVKIE 720 Query: 721 QTTGLPMLTVDIDRQKTARYGLNVSDIQDTIATAIGGKEAGTLFQGDRRFAIVVRLPDQA 780 QTTGLPMLTV+IDR+KTARYGLNVSDIQDT+ATAIGGKEAGT+FQGDRRF IVVRLPDQA Sbjct: 721 QTTGLPMLTVEIDREKTARYGLNVSDIQDTVATAIGGKEAGTMFQGDRRFGIVVRLPDQA 780 Query: 781 RTDLEAIRRLPVALPLQEGAQRTSYVPLGEVATLNIAPGPNQISREDGKRRIVVSANVRG 840 RTDLEAIRRLP+ALP QEGA R SYVPLGEVA+L IAPGPNQISREDGKRRIVVSANVRG Sbjct: 781 RTDLEAIRRLPIALPPQEGATRVSYVPLGEVASLTIAPGPNQISREDGKRRIVVSANVRG 840 Query: 841 RDLGGFVADAERQLQSEVRIPTGYWTTWGGQFENLQSATQRLQIVIPVALLMVFVLLFAM 900 RDLGGFVA+AERQLQS V++P GYWTTWGGQFENLQSATQRLQIVIPVALLMVFVLLFAM Sbjct: 841 RDLGGFVAEAERQLQSAVKVPAGYWTTWGGQFENLQSATQRLQIVIPVALLMVFVLLFAM 900 Query: 901 FGNVKDGLLVFTGIPFALTGGILALALRDIPMSISAAVGFIALSGVAVLNGLVMISFIRS 960 F NVKDGLLVFTGIPFALTGGILALA+R IPMSISAAVGFIALSGVAVLNGLVMISFIRS Sbjct: 901 FSNVKDGLLVFTGIPFALTGGILALAMRGIPMSISAAVGFIALSGVAVLNGLVMISFIRS 960 Query: 961 LREEGRSLDVAIHEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGIL 1020 LREEGR+LD AIHEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGIL Sbjct: 961 LREEGRTLDAAIHEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGIL 1020 Query: 1021 SSTALTLLVLPLLYRLAHAGDEE----GVVRRSGFW 1052 SSTALTLLVLPLLY+LAH DEE G R FW Sbjct: 1021 SSTALTLLVLPLLYKLAHDKDEEDNPAGPPSRPPFW 1056 >gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1063 Score = 275 bits (704), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 279/1057 (26%), Positives = 493/1057 (46%), Gaps = 73/1057 (6%) Query: 30 SYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQRISYPIE----TVMSGLPHLEQVRSL 85 + + + D P+I V I G S E QRI+ E TV+S + H+E S Sbjct: 28 TLKNMATDIFPEINIPVVSIIWNYNGLSAQEMGQRIAAQNERGLTTVVSDIEHIE---SQ 84 Query: 86 SRYGLSQVTVIFKDGTDIYFARQLVNERIQQARSQLPPGIDPGMGPISTGLGEIYLWTVE 145 S G+S + V F+ +I A V +Q QLPPGI P + + + ++ Sbjct: 85 SLAGVSVIKVFFQPKANIQTAIAQVVASVQTQVRQLPPGITPPL------VIKYSASSIP 138 Query: 146 AREDARKADGTPYTATDLREIQDWVIKPQLRLVPGVTEINTIGGFAREYLVAPSAEKLAS 205 + A + P +Q ++PQL +PGV GG +R V + L + Sbjct: 139 VMQLALSSPTLPEQTVFDAAVQ--TLRPQLVTIPGVAVPYPYGGKSRLISVDLDTQALQA 196 Query: 206 YGMTMDTVVKALEKNNNNVGAGYIERRGEQYLIRAPGQVGSTEDIGNIVLANVKGVPIRV 265 G+ VV A+ N + +G + +Y ++ G + + + + G I + Sbjct: 197 RGLAPIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVAGLNELPVRTTNGATIYL 256 Query: 266 RDVAEVGIGQELRTGAATENGREVVLGTVFMLIGENSRKVSQAVDKKMREINRTLPEGVE 325 +DVA V G +T ++G VL ++ G ++ + + K + +TLPE ++ Sbjct: 257 KDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNLRKLLPTAAQTLPEDIK 316 Query: 326 AVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFVFLGNIRAAIITATVIPLAMLFTFTG 385 ++D++V V A+ V + A L A++ +FLGN R+ +I IPL+++ Sbjct: 317 ITPLFDQSVFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTLIIGLTIPLSIMAAILI 376 Query: 386 MVSNKVSANLLSLG--ALDFGIIIDGAVVIVENCVRRLAHAQQHHGRTLTRSERFHE-VF 442 + + + NL++LG AL GI++D A+V +EN R L H G+ L H+ + Sbjct: 377 LAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHL-----HLGKPL------HDAII 425 Query: 443 AAAREARRPLLFGQLIIMIVYLPMFALTGVEGKMFTPMAFTVVAALVGAMILSVTFIPAA 502 A E P L I IV++PMF L+GV +F P+A VV A+ + +LS T +P Sbjct: 426 VGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRTLVPTL 485 Query: 503 IALFIGE--RVAEKENVMMAWAKRLYEPMLKRIMENKAVVLT--------FAGALIVVC- 551 + L +G +V + ++ R ++ +R+ +VL+ FA A + C Sbjct: 486 VMLLMGSHGQVDSAKQSLLQRLYRAFDNRFERVRHGYTLVLSSLLAHRRRFALAFLGFCL 545 Query: 552 --GAVATRLGTEFVPSLNEGDMAVQALRIP-GTSLSQSLEMQKQIERTLKQTFP--EIER 606 + LG +F P+++ G + + +R+P GT + ++ ++ER ++ P E+E Sbjct: 546 LSCLLYPFLGRDFFPNVDGGQIRLH-MRMPTGTRIEETARAADEVERVIRTLIPASELET 604 Query: 607 VFARTGTAEVASDPMPPNIS-----DGYIMLKPQDQWPQPRKTHEELLAAIQSEV-EKIP 660 + G + N DG I++ ++ + E L++ +++E+ + P Sbjct: 605 ILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKEG----HRPTEALVSMLRAELPRRFP 660 Query: 661 GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDMKVLNETAARISAVLEKIPGATEVKIE 720 G + F QP + L G+ + + V+ G +M+ AA ++ + +IPGA + + Sbjct: 661 GIEF-FFQPADIVTQILNFGLPAAIDVQFTGPNMEANARLAAELTKQIRQIPGAVDAHVH 719 Query: 721 QTTGLPMLTVDIDRQKTARYGLNVSDIQDTIATAIGGK-EAGTLFQGDRR----FAIVVR 775 Q P L + +DR + ++GL+ S++ + A+ G + F + + I V+ Sbjct: 720 QRLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQTQPAFWLNPNNGVVYNIAVQ 779 Query: 776 LPDQARTDLEAIRRLPVALPLQEGAQRTSYVP--LGEVATLNIAPGPNQISREDGKRRIV 833 P L+A+ +PV+ GA ++ P LG + ++ SR + I Sbjct: 780 SPQYQVDSLDALLNIPVS----PGANASTTPPQLLGNLVDVHAGRQMAVASRYNIAPAID 835 Query: 834 VSANVRGRDLGGFVADAERQL-QSEVRIPTGYWTTWGGQFENLQSATQRLQIVIPVALLM 892 V +V+G DL + Q + ++ G GQ E +QS+ L + + +A+++ Sbjct: 836 VYVSVQGTDLASVAGKVSALVEQIKPKLARGSQVVIRGQVETMQSSFTGLGVGLAMAIVL 895 Query: 893 VFVLLFAMFGNVKDGLLVFTGIPFALTGGILALALRDIPMSISAAVGFIALSGVAVLNGL 952 V++L+ F + D ++ +P AL G L + +S+ A G I GVA N + Sbjct: 896 VYLLVVVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMTMGVATANSI 955 Query: 953 VMISFIRSLREEGRSLDVAIHEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLA 1012 ++++F R REEG + A E TR+RPVLMTAL +G +PMAL G GAE PL Sbjct: 956 LIVAFARQRREEGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLGEGAEQNAPLG 1015 Query: 1013 TVVIGGILSSTALTLLVLPLLYRLAHAGDEEGVVRRS 1049 VIGG++ +T TL +P+++ AG + + RR+ Sbjct: 1016 RAVIGGLMLATVSTLFFVPVVF----AGVHQRLARRA 1048 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 273 bits (698), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 265/1062 (24%), Positives = 472/1062 (44%), Gaps = 95/1062 (8%) Query: 14 WLVLLAVLGMGAYGVYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQRISYPIETVM 73 W++ + ++ GA + LP+ P+I + + PG + + ++ IE M Sbjct: 13 WVLAIFIMLAGALAITG---LPVSQYPNIAPPTIVVTATYPGATAQTLDDSVTSLIEQEM 69 Query: 74 SGLPHLEQVRSLSR-YGLSQVTVIFKDGTDIYFARQLVNERIQQARSQLPPGIDPGMGPI 132 +G L+ + S S+ G Q+T+ F T+ A V R+++ ++LP + + Sbjct: 70 NGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPAAVTQQGVQV 129 Query: 133 STGLGEIYLWTVEAREDARKADGTPYTATDLREIQDWV---IKPQLRLVPGVTEINTIGG 189 + L+ + D + D + D++ + +++ VPGV + G Sbjct: 130 TKSRSNFLLFIGLSSTDGK---------LDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 190 FAREYLVAPSAEKLASYGMTMDTVVKALEKNNNNVGAGYI---ERRGEQYL---IRAPGQ 243 R + KL +T V A++ N V G + G Q + + GQ Sbjct: 181 -ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQ 239 Query: 244 VGSTEDIGNIVL-ANVKGVPIRVRDVAEVGIGQELRTGAATENGREVVLGTVFMLIGENS 302 + S E GNI+L AN G +R+RDVA V +G + + +G+ V + N+ Sbjct: 240 LTSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANA 299 Query: 303 RKVSQAVDKKMREINRTLPEGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFVFL 362 + AV KKM E+ + P GV+ YD + V +I V K L+E +LV V+F+FL Sbjct: 300 LGTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFL 359 Query: 363 GNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGA--LDFGIIIDGAVVIVENCVRR 420 NIR II V+P+A+L TF ++ S N+L++ L GI++D A+V+VEN R Sbjct: 360 QNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERI 419 Query: 421 LAHAQQHHGRTLTRSERFHEVFAAAREARRPLLFGQLIIMIVYLPMFALTGVEGKMFTPM 480 ++ G + + R A + L+ L+++ V++PM G G ++ Sbjct: 420 MS----EEGLSPADATR-----KAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQF 470 Query: 481 AFTVVAALVGAMILSVTFIPAAIALFIG--ERVAEKENV-MMAWAKRLYEPMLKRI---- 533 + ++VA++V +++++ T PA A + E+ E W R + Sbjct: 471 SLSMVASMVFSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGII 530 Query: 534 --MENKAVVLTFAGALIVVC-GAVATRLGTEFVPSLNEGDMAVQALRIPGTSLSQSLEMQ 590 M NKA LIV C G + RL F+P+ ++G + PG S S++ + Sbjct: 531 GGMLNKAGRYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVV 590 Query: 591 KQIERTLKQTFPEIERVFARTGTAEVASDPMPPNISDGYIMLKPQDQWPQPRKTH----- 645 KQIE + P +E A G + N + ++ P W Q K+ Sbjct: 591 KQIEEYYLKD-PAVEHAIAVLGYS------FSGNGQNAALVFTPLKDWSQRDKSQSADAI 643 Query: 646 --------EELLAAIQSEVEKIP----GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDD 693 ++ AI + P GN+ F+ +Q R +G+ V+ Sbjct: 644 AGKAFGAFSQIKDAIVFPLNPPPIPELGNATGFTFRLQDR-----AGLGHTALVQARNQI 698 Query: 694 MKVLNETAARISAVLEKIPGATEVKIEQTTGLPMLTVDIDRQKTARYGLNVSDIQDTIAT 753 + + ++ S VL V+ E P L +DIDR K G+ S I ++T Sbjct: 699 LGMASQ-----SKVLAG------VRPEGLEDAPQLQLDIDRDKANALGVPFSTINSVLST 747 Query: 754 AIGGKEAGTLFQGDRRFAIVVRLPDQARTDLEAIRRLPVALPLQEGAQRTSYVPLGEVAT 813 A+G R+ ++V+ + R E + L + VP T Sbjct: 748 ALGSSYVNDFPNLGRQQRVIVQADAKRRLQPEDLTN------LYARNSSGTMVPFSAFVT 801 Query: 814 LNIAPGPNQISREDGKRRIVVSANVR-GRDLGGFVADAERQLQSEVRIPTGYWTTWGGQF 872 GP Q+ R +G + ++ GR G +A+ E + ++P G+ W GQ Sbjct: 802 AKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEMESFV---AKLPPGFGFEWTGQS 858 Query: 873 ENLQSATQRLQIVIPVALLMVFVLLFAMFGNVKDGLLVFTGIPFALTGGILALALRDIPM 932 +++ + + ++L+ VF++L A++ + L V +P + G +L + LR +P Sbjct: 859 LEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVVPLGILGALLGVTLRAMPN 918 Query: 933 SISAAVGFIALSGVAVLNGLVMISFIRSLREEGRSLDVAIHEGAMTRLRPVLMTALVASL 992 + VG IA+ G++ N +++I F + L+ +G+ L A E R RP++MT+L L Sbjct: 919 DVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLEAVHLRFRPIIMTSLAFIL 978 Query: 993 GFVPMALATGTGAEVQRPLATVVIGGILSSTALTLLVLPLLY 1034 G +P+A+A+G G+ QR + T V+GG++++T L + ++P+ + Sbjct: 979 GVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 271 bits (693), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 274/1071 (25%), Positives = 483/1071 (45%), Gaps = 94/1071 (8%) Query: 7 RFAIEHRWLVLLAVLGMGAYGVYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQRIS 66 RF I+ + L + +GV + +LPI P + V IN PG +P + Sbjct: 3 RFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVI 62 Query: 67 YPIETVMSGLPHLEQVRSLS-RYGLSQVTVIFKDGTDIYFARQLVNERIQQARSQLPPGI 125 IE +SG+ +L S + G +Q++V FK GTD A+ V +++ ++LP + Sbjct: 63 SLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQTV 122 Query: 126 DPGMGPISTGLGEIYLWTVEAREDARKADGTPYTATDLREIQDWVIKPQLRLVPGVTEIN 185 + + L D R Y L + I +LR + GV + Sbjct: 123 RQNGVTVESAASSFLLMVSLTSVDGR------YDEVRLNDYLARNIVEELRRMEGVGRVQ 176 Query: 186 TIGGFAREYLVAPSAEKLASYGMTMDTVVKALEKNNNNVGAGYIER----RGEQYL--IR 239 G + + KL +YG+T+ + A+ + N + G + RG+Q + Sbjct: 177 LFGA-EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLT 235 Query: 240 APGQVGSTEDIGNIVL-ANVKGVPIRVRDVAEVGIGQELRTGAATENGREVVLGTVFMLI 298 GQ+ S IVL A G + + DVA V +G + A ENG+ + V + Sbjct: 236 VQGQLQSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSP 295 Query: 299 GENSRKVSQAVDKKMREINRTLPEGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVL 358 G N+ + + A+ +M E+ +LP+G+ Y+ V +I V + L+E +LV V+ Sbjct: 296 GANAVRTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVM 355 Query: 359 FVFLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGA--LDFGIIIDGAVVIVEN 416 ++FL N+R +I A V P+A+L T M S N+L++ L GII+D A+V+VEN Sbjct: 356 YLFLQNVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVEN 415 Query: 417 CVRRLAHAQQHHGRTLTRSERFHEVFAAAREARRPLLFGQLIIMIVYLPMFALTGVEGKM 476 R +AH + G + E+ A ++ L++ V++PM G G + Sbjct: 416 VERIMAH--EGLGPREATIKAMGEITGA-------IIGITLVLTAVFIPMALAGGSVGVI 466 Query: 477 FTPMAFTVVAALVGAMILSVTFIPAAIALFIGERVA---EKENVMMAWAKRL------YE 527 + + + +++ + L+++ PA A + A +K A+ + YE Sbjct: 467 YRQFSVAMAVSILFSAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYE 526 Query: 528 PMLKRIMENKAVVLTFAGAL--IVVCGAVATRLGTEFVPSLNEGDMAVQALRIPGTSLSQ 585 L R++ ++ AL ++V G A L + F+P ++G + + ++P + ++ Sbjct: 527 SALGRLIARGLRMMLVYAALSGLLVVGMQA--LPSAFLPEEDQGYF-MTSFQLPADATTE 583 Query: 586 -SLEMQKQIERTLKQTFPEIERVFARTGTAEVASDPMPPNISDGYIMLKPQDQWPQPRKT 644 + Q ER LK E + A PN + + LK W + + + Sbjct: 584 RTARAVDQFERYLKGR----EDIGANLSVLGFGFSGSGPNAAMAFTELK---DWKERKGS 636 Query: 645 HEE-----------------LLAAIQSEVEKIPGNSYEFSQPIQLRFNELISGVRSDVAV 687 +++ + +E++ GNS F+ +Q R N+ A+ Sbjct: 637 TSAAEAMAAQAAMESGVDGMVMSLLPPAIEEL-GNSSGFAMRLQDRANQ------GYAAL 689 Query: 688 KVFGDDMKVLNETAARISAVL-EKIPGATEVKIEQTTGLPMLTVDIDRQKTARYGLNVSD 746 K + L + ++S V + +P V++E IDR K A G++ S Sbjct: 690 KAAEAQLLALAAKSRKLSGVYSDGLPAGASVQLE-----------IDRHKAAALGVSFSS 738 Query: 747 IQDTIATAIGGKEAGTLFQGDRRFAIVVRLPDQARTDLEAIRRLPVALPLQEGAQRTSYV 806 I DT++ A+G R ++++ AR LE + +L V Q V Sbjct: 739 ISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLEDVMKLYVR------NQSGGMV 792 Query: 807 PLGEVATLNIAPGPNQISREDGKRRIVVSANVR-GRDLGGFVADAERQLQSEVRIPTGYW 865 PL E+ + P Q+ R G + +S + G G +A+ ER Q ++P G+ Sbjct: 793 PLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEMERLAQ---QLPPGFA 849 Query: 866 TTWGGQFENLQSATQRLQIVIPVALLMVFVLLFAMFGNVKDGLLVFTGIPFALTGGILAL 925 W GQ + + + +++ +++L+VF++L A++ + L V +P L G + A+ Sbjct: 850 VAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVMLVVPLGLVGAVAAV 909 Query: 926 ALRDIPMSISAAVGFIALSGVAVLNGLVMISFIRSLREEGRSLDVAIHEGAMTRLRPVLM 985 LRD+P + VG I + G++ N ++++ F R LR EG L A + ++ RLRP+LM Sbjct: 910 ILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEAAIKASVLRLRPILM 969 Query: 986 TALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTALTLLVLPLLYRL 1036 T+L +LG VP+ LA+G AE QR + T V GG++S+T L +L +P+ + L Sbjct: 970 TSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVPVFFVL 1020 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 268 bits (686), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 275/1081 (25%), Positives = 490/1081 (45%), Gaps = 85/1081 (7%) Query: 7 RFAIEH---RWLVLLAVLGMGAYGVYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQ 63 RF I+ W++ + ++ +G G+ S + L ++ PDI +V I G S E Sbjct: 3 RFFIDRPIFAWVIAIIIM-LG--GMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLED 59 Query: 64 RISYPIETVMSGLPHLEQVRSLSRYGLS-QVTVIFKDGTDIYFARQLVNERIQQARSQLP 122 ++ IE M GL +L+ + + S S V++ F GT+ A+ V ++QQ ++LP Sbjct: 60 SVTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLP 119 Query: 123 PGIDPGMGPISTGLGEIYLWTVEAREDARKADGTPYTATDLREIQDWVIKPQLRLVPGVT 182 + ++ +I + +D R T+ D+ + + Q+ V GV Sbjct: 120 QAVQNNGVTVTKASTDILMVLSLTSDDPR------ITSIDIGDFISSTLTDQISRVEGVG 173 Query: 183 EINTIG-GFAREYLVAPSAEKLASYGMTMDTVVKALEKNNNNVGAGYI----ERRGEQY- 236 ++ G +A + P+ KL Y + + AL+ N V AG I + G+Q Sbjct: 174 DVTAFGTNYAMRIWIDPA--KLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQIN 231 Query: 237 -LIRAPGQVGSTEDIGNIVL-ANVKGVPIRVRDVAEVGIGQELRTGAATENGREVVLGTV 294 I A ++ + ++ NI++ ++V G +++ DVA V +G E A+ +NG+ + Sbjct: 232 ATITARSKLTTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAI 291 Query: 295 FMLIGENSRKVSQAVDKKMREINRTLPEGVEAVT--VYDRTVLVDKAIATVKKNLVEGAL 352 + G N+ + AV KK+ E+ P ++ T YD T V ++ V K L+E + Sbjct: 292 QLATGANALATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIV 351 Query: 353 LVVAVLFVFLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGA--LDFGIIIDGA 410 LVV ++++FL NIRA I A +P+ +L TF + S N L++ L G+++D A Sbjct: 352 LVVLIMYLFLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDA 411 Query: 411 VVIVENCVRRLAHAQQHHGRTLTRSERFHEVFAAAREARRPLLFGQLIIMIVYLPMFALT 470 +V+VEN V RL ++ + TR + E+ A L+ +++ V++PM Sbjct: 412 IVVVEN-VERLMSEEKLSPKEATR-KSMQEITGA-------LVGIAMVLSAVFIPMAFFG 462 Query: 471 GVEGKMFTPMAFTVVAALVGAMILSVTFIPAAIALFIGERVAE--KENVMMAWAKRLYEP 528 G G ++ + T+V+A+ ++++++T PA A + ++ W R ++ Sbjct: 463 GSTGVIYRQFSITIVSAMALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDR 522 Query: 529 MLKRIMENKAVVLT------FAGALIVVCGAVA-TRLGTEFVPSLNEGDMAVQALRIPGT 581 R A +L ALI V AV RL T F+P ++G + Q G Sbjct: 523 SATRYQGGVAGLLKRGKRGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGA 582 Query: 582 SLSQSLEMQKQIERTLKQTFPEIERVFARTGTAEVASDPMPPNISDGYIMLKPQDQWPQP 641 + Q+ + K ++ +E V A G A V + N + +I LK +Q Sbjct: 583 TAEQTATVVKTVQEYFMNKPESVESVLAIVG-AGVGGNSQ--NGARAFIRLKDWEQRTGA 639 Query: 642 RKTHEELLAAIQSEVEKIPGNSYEFSQPIQLR-------FN-EL--ISGVRSDVAVKVFG 691 ++ EL+ +++ KI G P +R F+ EL + GV D ++ Sbjct: 640 GQSASELVRRANADLSKIRGARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARD 699 Query: 692 DDMKVLNETAARISAVLEKIPGATEVKIEQTTGL---PMLTVDIDRQKTARYGLNVSDIQ 748 +++ AR +A+L + +TTGL P L V ID +K + SDI Sbjct: 700 QFLQL-----ARSNALLANV---------RTTGLDDTPQLRVAIDDRKADALSIATSDIN 745 Query: 749 DTIATAIGGKEAGTLFQGDRRFAIVVRLPDQARTDLEAIRRLPVALPLQEGAQRTSYVPL 808 T+ATA+GG R + V+ R + + R V + A + VP Sbjct: 746 ATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQADDLNRWYV----RNAASQ--MVPF 799 Query: 809 GEVATLNIAPGPNQISREDGKRRI-VVSANVRGRDLGGFVADAERQLQSEVRIPTGYWTT 867 + GP+ + R +G +V G G +A+ E+ + ++P G Sbjct: 800 AAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMAEVEKLV---AQLPAGIGFE 856 Query: 868 WGGQFENLQSATQRLQIVIPVALLMVFVLLFAMFGNVKDGLLVFTGIPFALTGGILALAL 927 W G + + + ++ +++L VF+ L A++ + V +P + G +L + Sbjct: 857 WTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVILAVPLGIIGTVLLTGI 916 Query: 928 RDIPMSISAAVGFIALSGVAVLNGLVMISFIRSLREEGRSLDVAIHEGAMTRLRPVLMTA 987 + + VG + G++ N ++++ F + L E G+SL A E RLRP+LMT+ Sbjct: 917 FGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEATLEAVQLRLRPILMTS 976 Query: 988 LVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTALTLLVLPLLYRLAHAGDEEGVVR 1047 L G +P+A+A+G G+ +R + T V+GG+LS+T L + +PL Y L A + R Sbjct: 977 LAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVPLFYYLIGAWLDRRAAR 1036 Query: 1048 R 1048 + Sbjct: 1037 K 1037 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,113,310 Number of extensions: 128700 Number of successful extensions: 574 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 493 Number of HSP's successfully gapped: 14 Length of query: 1078 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 983 Effective length of database: 1,170,045 Effective search space: 1150154235 Effective search space used: 1150154235 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)