BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0125.p
         (428 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313718|ref|YP_003777810.1| cobalt-zinc-cadmium resistance ...   642   0.0  

>gi|300313718|ref|YP_003777810.1| cobalt-zinc-cadmium resistance
           cation efflux system outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/424 (77%), Positives = 367/424 (86%)

Query: 1   MFRHSFTLGLALLAASSSHAQSPAQSNPQSILPATASALDREAGPLSLQAAISLVFDHNK 60
           M+RHS  L L LLAA  SHAQ  A +N +   P TAS+L  E   LSL AAISL  + NK
Sbjct: 1   MYRHSILLALGLLAAGVSHAQDTAPANTEHPQPHTASSLASEPRLLSLPAAISLALEQNK 60

Query: 61  TLAAARKEIEAVEATILQAGARPNPEFSALIEDVRKSSRTTTYQINQAIELGGKRGARIE 120
           TLAAARKEIEAVEATI+QAGARPNPEFSAL+ED RKSSRTTTYQ+ Q IELGGKR ARIE
Sbjct: 61  TLAAARKEIEAVEATIIQAGARPNPEFSALMEDFRKSSRTTTYQLTQPIELGGKRSARIE 120

Query: 121 AAQRARDMAVLEYAAKRSELRAAVVAAYVDVMVATERQRLAGELLGLAKTSAEMTGRRVT 180
           AAQR R+MA+L+YAAKR+E+RA V+AAY +VMVA ERQRLA ELLGLAKTSA+MT RRVT
Sbjct: 121 AAQRTREMALLDYAAKRTEIRAGVIAAYYEVMVAMERQRLAKELLGLAKTSADMTSRRVT 180

Query: 181 AGKISPVEQTKAQVAQSGAQLELSQANSELLLARRTLAMLWGGGNDRVQLSEGGVESLPP 240
           AGKISPVEQTKA+VA+S AQLEL QA+S++LLA++ LA  WG   +  QL++GGVESLP 
Sbjct: 181 AGKISPVEQTKARVAESSAQLELHQADSDVLLAQKKLATFWGSVGNAFQLTDGGVESLPA 240

Query: 241 LPAIAQLTEQVANGPAVRLARLEVERRRALARIETSKRTPDVSLTLGNKRDESSARNMWV 300
           LP+IAQLTE+VA GPAV+LA+LEVERRRALARIETSKRTPDV+L+ GNKRDES+ARNMWV
Sbjct: 241 LPSIAQLTEKVAAGPAVQLAQLEVERRRALARIETSKRTPDVTLSFGNKRDESNARNMWV 300

Query: 301 VGVSVPIPVFDSNQGNELEALKRVDIARDTLAVAEVQMQGEAAQGFERLRNAREEATALR 360
           VG SVPIPV DSN+GNELEALKRVDIARD L++ EVQMQ EAAQ FERLRNAREEA ALR
Sbjct: 301 VGFSVPIPVLDSNKGNELEALKRVDIARDELSIVEVQMQSEAAQSFERLRNAREEAVALR 360

Query: 361 NDIVPAAQSAYQAARTAFEAGKFAYLDVLDAQRTYFQAKAQYWKALSTAFQAAADLDRLA 420
           N+IVP AQSAYQAART FE GKFAYLDVLDAQRTYFQAKAQYWKALSTAFQAAADLDRLA
Sbjct: 361 NEIVPGAQSAYQAARTGFELGKFAYLDVLDAQRTYFQAKAQYWKALSTAFQAAADLDRLA 420

Query: 421 GIET 424
           G ET
Sbjct: 421 GNET 424


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.126    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,007,269
Number of extensions: 34241
Number of successful extensions: 227
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 6
Length of query: 428
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,203,190
Effective search space: 409084600
Effective search space used: 409084600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)