BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0122.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone decarbox...   217   5e-58
gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321...   131   3e-32

>gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone
           decarboxylase domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 191

 Score =  217 bits (553), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 129/187 (68%), Gaps = 3/187 (1%)

Query: 5   TSQPRLPAVDVSTATPAQKEVLEDILKGPRGNLAGPFLSWIHSPELAQHAQKLGAFCRYH 64
           T   RLPA+     T  Q  +L+ IL GPR NL GPF++WIHSP L + AQ+LGAFCRY 
Sbjct: 2   TKSNRLPAIVREQMTSEQTAMLDAILAGPRKNLNGPFVAWIHSPALGELAQRLGAFCRYE 61

Query: 65  TQLPLSLSELAILCTAARWQAQAEWQIHYPIGIEAGLDAANVEQIRRGERPDFAARDEQM 124
           T LPL LSELAIL TAA WQ+QAEW IH PI +EAG+     EQIR+G  PDF   DE++
Sbjct: 62  TGLPLRLSELAILATAAAWQSQAEWHIHLPIAVEAGILPDVAEQIRQGATPDFPLEDERV 121

Query: 125 IWELVEELYETKRISDPLYREAEQRFGIEVLVNLVGLLGYYSLVAMTLNVFHVR---HGD 181
           IW    ELY  KR+S+  Y  A   FG+ V+VNLVGLLGYY+LVAMTLN F +R    G+
Sbjct: 122 IWNFANELYRDKRVSERTYAAAVAMFGLPVVVNLVGLLGYYALVAMTLNAFGMRAEGQGE 181

Query: 182 GALPFAE 188
           G LPFAE
Sbjct: 182 GDLPFAE 188


>gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  131 bits (330), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 98/165 (59%)

Query: 9   RLPAVDVSTATPAQKEVLEDILKGPRGNLAGPFLSWIHSPELAQHAQKLGAFCRYHTQLP 68
           RLP +     TP QK+  ++ L   +  + GPF   +HSP++   A+ +G + RYH+ + 
Sbjct: 24  RLPVIPPEQYTPEQKQAADEFLAARKVPVFGPFEPLMHSPQVMTQARAMGDYLRYHSAIG 83

Query: 69  LSLSELAILCTAARWQAQAEWQIHYPIGIEAGLDAANVEQIRRGERPDFAARDEQMIWEL 128
            +LSEL IL TA  W    EW +HYPI I+AG+       I  G RP+  + +E ++++ 
Sbjct: 84  NTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEIAAAIADGRRPEGMSEEETIVYDF 143

Query: 129 VEELYETKRISDPLYREAEQRFGIEVLVNLVGLLGYYSLVAMTLN 173
             EL+  KR+SD  +  AE+RFG + +V+L G+  YY+L+AM +N
Sbjct: 144 SIELHRNKRVSDQTFARAEKRFGKKGVVDLTGVNSYYTLLAMQMN 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 619,649
Number of extensions: 23479
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)