BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0116.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313737|ref|YP_003777829.1| gluconolactonase [Herbaspirillu...   611   e-176
gi|300313307|ref|YP_003777399.1| gluconolactonase [Herbaspirillu...    62   7e-11

>gi|300313737|ref|YP_003777829.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 306

 Score =  611 bits (1575), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 299/306 (97%), Positives = 303/306 (99%)

Query: 1   MSFFAPPPTVEASVFTRLPDHFRTPRKNAWGDANRGGLPIDSFLEGPSFDRQGRLYVTDI 60
           MSFFAPPP VEASVFTRLP+HFRTPRKNAWGDANRGGLPIDSFLEGPSFDRQGRLYVTDI
Sbjct: 1   MSFFAPPPVVEASVFTRLPEHFRTPRKNAWGDANRGGLPIDSFLEGPSFDRQGRLYVTDI 60

Query: 61  PYGRIFRISMDGQWELVTEYDGWPNGLKIDKSGRIVITDYKRGLVQLDPDTGTVTPLLET 120
           PYGRIFRI+MDGQWELVTEYDGWPNGLKIDK+GRIVITDYKRGLVQLDPDTGTVTPLLET
Sbjct: 61  PYGRIFRITMDGQWELVTEYDGWPNGLKIDKTGRIVITDYKRGLVQLDPDTGTVTPLLET 120

Query: 121 VGSEGFKGVNDLVFGPKGEIYFTDQGQTGLQDATGRVYRLAPDGQLTCLINTIPSPNGIV 180
           VGSEGFKGVNDLVFGPKGEIYFTDQGQTGLQD TGRVYRLAPDGQLTCLINTIPSPNGIV
Sbjct: 121 VGSEGFKGVNDLVFGPKGEIYFTDQGQTGLQDPTGRVYRLAPDGQLTCLINTIPSPNGIV 180

Query: 181 YDPALNHLLVAVTRAQQIWRIPLHHNGVVGKVGVFANLHGGMAGPDGLALDAESCLYIAH 240
           YDPALNHLLVAVTRAQQIWRIPLHHNGVVGKVGVFANLHGGMAGPDGLALDAES LYIAH
Sbjct: 181 YDPALNHLLVAVTRAQQIWRIPLHHNGVVGKVGVFANLHGGMAGPDGLALDAESNLYIAH 240

Query: 241 TGFGSIWRLSKFAEPLLRIRSTAGISTTNLAFGGPDGKSLFITESQTGSILRADVPVAGL 300
           TGFGSIWRLSKFAEPLLRIRS+AGISTTNLAFGGPDGKSLFITESQTGSILRADVPVAGL
Sbjct: 241 TGFGSIWRLSKFAEPLLRIRSSAGISTTNLAFGGPDGKSLFITESQTGSILRADVPVAGL 300

Query: 301 PMYSHA 306
           PMYSHA
Sbjct: 301 PMYSHA 306


>gi|300313307|ref|YP_003777399.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 113/261 (43%), Gaps = 42/261 (16%)

Query: 54  RLYVTDIPYGRIFRISMDGQWELVTEYDGWPNGLKIDKSGRIVITDYK-RGLVQLDPDTG 112
            L  +DIP  R+ R S      +  +   + NG  +D+ GRIV   +  R +V+ + D G
Sbjct: 46  ELIWSDIPNNRLMRWSEGAGAGVFRQPSNFNNGNTLDREGRIVGCLHGGRAVVRTEHD-G 104

Query: 113 TVTPLLETVGSEGFKGVNDLVFGPKGEIYFTD------------QGQTGLQDATGRVYRL 160
           ++T L      +     ND+V    G I+FTD            Q Q+ +      VYR+
Sbjct: 105 SITTLASHWQGKRLNSPNDVVVKSDGSIWFTDPDYGINSDYEGYQAQSEI--GACNVYRI 162

Query: 161 APD-GQLTCLINTIPSPNGIVYDPALNHLLVAVTRAQQIWRIPLHH-------NGVVGKV 212
             D G+++ + + +  PNG+ +      L +A T        P HH       +G+  KV
Sbjct: 163 DGDSGEISIVASDLERPNGLAFSTDERRLYIADTGLTHRAGGP-HHIRVFDVVDGISLKV 221

Query: 213 G-VFANLHGGMAGPDGLALDAESCLYIA-----HTGFGSIWRLSKFAEPLLRIRSTAGIS 266
           G VFA +  G+A  DG  LDA+  ++ +     H        L K   P +         
Sbjct: 222 GEVFATIDPGLA--DGFRLDAQGNVWTSAGDGVHCYAPDGTLLGKILIPEV--------- 270

Query: 267 TTNLAFGGPDGKSLFITESQT 287
            +N+ FGGP G  LFIT + +
Sbjct: 271 VSNVVFGGPRGNRLFITATTS 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,139,666
Number of extensions: 53650
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)