BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0107.p
         (225 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313750|ref|YP_003777842.1| transmembrane protein [Herbaspi...   379   e-106
gi|300313686|ref|YP_003777778.1| transmembrane protein [Herbaspi...   134   7e-33

>gi|300313750|ref|YP_003777842.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  379 bits (972), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/213 (88%), Positives = 195/213 (91%)

Query: 13  PIASAPPARATPPATPAVRHSWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQIAGVAFLV 72
           PIA   PA    PA   VRHSWIDNLQGQ FGVVM+AFGMSMLHSLGLIIGQIAGVAFLV
Sbjct: 21  PIAPVAPAPVRGPAASPVRHSWIDNLQGQFFGVVMVAFGMSMLHSLGLIIGQIAGVAFLV 80

Query: 73  TYATGISFGMAFTLINLPFYLLAALRMGAAFTWRTLAAVTAVSVLTNVAGNYISYSHLDP 132
           +Y +GISFG+AFTLINLPFYLLAALRMGAAFTWRTLAAVTAVS+LTN+AGNYISY HLDP
Sbjct: 81  SYGSGISFGLAFTLINLPFYLLAALRMGAAFTWRTLAAVTAVSLLTNIAGNYISYRHLDP 140

Query: 133 AVGAVLAGLCVGIGLIGLFRHQASCGGMSILATYVQERTGFKAGWLLMGFDLALFATAAL 192
           AVGAVLAGLCVGIGLI LFRHQASCGGMSILA YVQERTGFKAGWLLMGFDLALFATAA 
Sbjct: 141 AVGAVLAGLCVGIGLIALFRHQASCGGMSILAAYVQERTGFKAGWLLMGFDLALFATAAW 200

Query: 193 FLPMDRVFYSLVGAITMNLFVAWNHRYEWYIAR 225
           FLPM+RV YSL GAITMNLFVAWNHRYEWYIAR
Sbjct: 201 FLPMERVLYSLAGAITMNLFVAWNHRYEWYIAR 233


>gi|300313686|ref|YP_003777778.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  134 bits (337), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 113/194 (58%)

Query: 31  RHSWIDNLQGQLFGVVMIAFGMSMLHSLGLIIGQIAGVAFLVTYATGISFGMAFTLINLP 90
           RH   +++   + G + I+ G++M   +GL+ G  AG+AFL  Y TG+ FG  F  INLP
Sbjct: 16  RHRSYEDVLALVAGTLFISLGVNMYTQVGLLTGSTAGLAFLAHYLTGLPFGAVFFTINLP 75

Query: 91  FYLLAALRMGAAFTWRTLAAVTAVSVLTNVAGNYISYSHLDPAVGAVLAGLCVGIGLIGL 150
           FY  A  RMG  F  +T  AV  VS  + +   +ISY  LD    AVL GL +G+G + L
Sbjct: 76  FYYFAWRRMGKRFMLKTFCAVALVSGFSLMHPYFISYGKLDLFYSAVLGGLLIGVGFVML 135

Query: 151 FRHQASCGGMSILATYVQERTGFKAGWLLMGFDLALFATAALFLPMDRVFYSLVGAITMN 210
           FRH AS GG++++  ++Q+R G +AG L MG D+ +   +   +    +  S++GA+T N
Sbjct: 136 FRHGASLGGINVVTLFLQDRYGLRAGKLQMGVDVVIVLCSLWVVAPKVLLASILGAVTAN 195

Query: 211 LFVAWNHRYEWYIA 224
           L +A NHR   Y+ 
Sbjct: 196 LIIALNHRAGRYMG 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 626,925
Number of extensions: 24991
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,231,600
Effective search space: 176118800
Effective search space used: 176118800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)