BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0099.p (258 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313756|ref|YP_003777848.1| nitrate/sulfonate/bicarbonate A... 508 e-145 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 152 2e-38 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 152 3e-38 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 152 3e-38 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 151 4e-38 >gi|300313756|ref|YP_003777848.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 508 bits (1309), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/258 (97%), Positives = 253/258 (98%) Query: 1 MSYIEIRNVWQQYGQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 MSYIEIRNVWQQY QNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL Sbjct: 1 MSYIEIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 Query: 61 LLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPRSPLLGRLFGGAKRRAREE 120 LLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPRS LLGRLFGG KRRAREE Sbjct: 61 LLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPRSALLGRLFGGTKRRAREE 120 Query: 121 AAQLLHRVGLGHALDLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH 180 AAQLLHRVGLGHAL+LYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH Sbjct: 121 AAQLLHRVGLGHALELYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH 180 Query: 181 ALLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNEA 240 LLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNEA Sbjct: 181 TLLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNEA 240 Query: 241 RAREQADKLASLLTAKES 258 RAREQA KLASL+TAKES Sbjct: 241 RAREQAGKLASLITAKES 258 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 17/225 (7%) Query: 1 MSYIEIRNVWQQYGQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 M+ + IRN+ ++Y N V+ +NL +E+G+F VG SGCGKST LR++ G E S G L Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 LLQGQPFPAEPDATRGV--VFQRYSVFPHLNVLDNVAIGLELPRSPLLGRLFGGAKRR-- 116 + + P + RGV VFQ Y+++PH+++ DN+A GL ++ G +K Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGL---------KIAGKSKAEID 111 Query: 117 -AREEAAQLLHRVGLGHALDLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGI 175 A + AA++LH + H LD P +LSGG +QR+AI +A+ +P V L DEP LD + Sbjct: 112 AAVQHAAKILH---IDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAAL 168 Query: 176 RKEMHALLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVD 220 R +M L D T+ VTHD E TL +++V + R++ Sbjct: 169 RVKMRLEFAKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIE 213 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 152 bits (384), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 134/219 (61%), Gaps = 15/219 (6%) Query: 4 IEIRNVWQQYGQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 +E ++V +++G NVVL+ +NL + +G+ L+G SG GKST LR + E G LL+ Sbjct: 2 VEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLVD 61 Query: 64 GQPFPAEPDATR------GVVFQRYSVFPHLNVLDNVAIGLELPRSPLLGRLFGGAKRRA 117 G + + R G+VFQ++++FP L L+NVA G PR + G + A Sbjct: 62 GISVLSGSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFG---PR-----HVRGASSEEA 113 Query: 118 REEAAQLLHRVGLGHALDLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRK 177 A++LL +VGL YP+ LSGG QQR+AIA+AL VRP+++L DEP ALDP +R+ Sbjct: 114 NALASELLAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPELRQ 173 Query: 178 EMHALLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDK 216 E+ ++ L ++ G+T+ +VTH++S +GTRL+ + Sbjct: 174 EVLRVMQSLAEE-GMTMIVVTHEISFARRVGTRLIFMEN 211 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 152 bits (383), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/196 (43%), Positives = 118/196 (60%), Gaps = 10/196 (5%) Query: 19 LERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQGQPFPAEPDATRGVV 78 L+R++L + G F +G SGCGKST L + G S+G++ L GQP P A RGVV Sbjct: 22 LDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSG-PGAERGVV 80 Query: 79 FQRYSVFPHLNVLDNVAIGLELPRSPLLGRLFGGAKRRAREEAAQLLHRVGLGHALDLYP 138 FQ+ S+ P +V DNVA+GL + G +K +RE A +LL VGL P Sbjct: 81 FQKDSLLPWKSVQDNVALGL---------KFAGVSKSDSRERAQELLRLVGLQDFARAAP 131 Query: 139 SSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHALLLDLWKDSGLTVFMVT 198 LSGGM+QR+ +A+AL P++LL+DEPFGALD R++M LL+ +W +G VF +T Sbjct: 132 YELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFIT 191 Query: 199 HDLSEGFTLGTRLLVF 214 H + E LGT ++V Sbjct: 192 HSIEEALFLGTEVIVM 207 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 151 bits (382), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 129/220 (58%), Gaps = 9/220 (4%) Query: 4 IEIRNVWQQYGQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 IE+ ++ +++G L ++L G+ L+G SGCGK+T LR++ G E P GQ+LL Sbjct: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 Query: 64 GQPFPAEPDATR--GVVFQRYSVFPHLNVLDNVAIGLEL-PRSPLLGRLFGGAKRRAREE 120 G+ A R G VFQ Y++F H+ V +N+A GL + PRS ++ RE+ Sbjct: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQR------PSEAVIREK 116 Query: 121 AAQLLHRVGLGHALDLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMH 180 +LL V L D YP LSGG +QR+A+A+AL V PRVLLLDEPFGALD +RKE+ Sbjct: 117 VKRLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 181 ALLLDLWKDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVD 220 L L + +T VTHD E + ++++ +K +V+ Sbjct: 177 RWLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVE 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 827,997 Number of extensions: 35855 Number of successful extensions: 499 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 146 Length of query: 258 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 175 Effective length of database: 1,226,865 Effective search space: 214701375 Effective search space used: 214701375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)