BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0094.p
         (205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310661|ref|YP_003774753.1| flavoprotein oxygenase, DIM6/NT...    88   5e-19

>gi|300310661|ref|YP_003774753.1| flavoprotein oxygenase, DIM6/NTAB
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score = 87.8 bits (216), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 11/196 (5%)

Query: 17  AHDPIPSILGPRPIGWISTLNAEGRPNLAPYSFFNIFNYRPPIVAFASV----GK-KDSV 71
           A++ + S++ PRPI W+STL+A+GR NLAP+SFF +   +PP +    +    GK KD+V
Sbjct: 13  AYEWMSSLIVPRPIAWVSTLDAQGRANLAPFSFFQMVTGKPPTLLICPLLQRGGKLKDTV 72

Query: 72  RNAEATGEFVYNLATRALAEQVNQSSLE-QSEVNEFELAGLTPVTGLVVAAPRVAESPVA 130
            N +  GEFV NLA  A A Q+N++S   ++ V+EFE  G+T      VA PRVA +  +
Sbjct: 73  LNIDERGEFVVNLAAPAQAAQLNETSFPFEAGVSEFEACGVTAAPSQRVAPPRVAAAAAS 132

Query: 131 MECKVTQIQPLTTLEGRTLDTWMVYGEVVAVHIDQSLL-VEGVYDTAAAQHILRGGGPAD 189
            ECK+  ++P            +V GEV+  H+   LL  +G  D      + R GG   
Sbjct: 133 FECKLAMLEPYPR---HAPSCHLVLGEVLVAHVQDDLLDADGKLDPGKVDLLFRMGGEW- 188

Query: 190 YFEVLPQGRFQMRRPK 205
           Y   +    F + RP+
Sbjct: 189 YGRSINAANFTLPRPR 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 685,652
Number of extensions: 27671
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,236,335
Effective search space: 153305540
Effective search space used: 153305540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)