BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0088.p (773 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 284 2e-77 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 252 7e-68 gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 122 8e-29 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 284 bits (726), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 160/350 (45%), Positives = 219/350 (62%), Gaps = 5/350 (1%) Query: 410 LLTPFKVRELTLNNRVVASPTLLYAAREGVAGDFHLVHLGARALGGIGLLLTEATAVSPE 469 L +P +R +TL NR+ SP Y+A +G D+HLVHLG+RA+GG GL+L EATAV E Sbjct: 5 LFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATAVVAE 64 Query: 470 GRMTPGCPGLWNEEQKQGWKRVVNMVHANSQARIGLQLNHAGRRGSTQLGWEQP--DRPL 527 GR++ G+W +E +R+ + A G+QL HAGR+ S W+ P P Sbjct: 65 GRISSADLGIWKDEHIAPLRRITRFIEQQG-AVPGIQLAHAGRKSSILRPWDGPAGSVPP 123 Query: 528 AAGNWPLVSASALPYLEGVSQVPAEASHEELARIREDFVAATRRAVEAGFDWLELQAGHG 587 +AG W + SALP+ +G S P S E++ + + F A +RA+ AGF +EL HG Sbjct: 124 SAGGWTPQAPSALPFDDGYS-TPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHGAHG 182 Query: 588 CLLSSFLSPLTNQRQDEYGGTLENRLRYVLEVVKAVRAAWPAHLPLSVRISATDWAEGGT 647 L FLSPL+NQR DEYGG+ ENR+R++LE+ +A RA WP LPL VR+SATDW +GG Sbjct: 183 YLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVDGGW 242 Query: 648 TVDEAVEIARQLHAHGADLIDVSSGEVTPAQKPVYGRMFQAPFADRIRNEAGVPTIAVGA 707 T +E V ++++L G DL+DVSSG P G +Q FA R++ EAG+ + AVG Sbjct: 243 TPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAARVKAEAGIASGAVGM 302 Query: 708 ITEADQVNGIIASGRADLCALSRPLLADPAWLLHESARQGWREVSWPPAY 757 IT+A Q I+ +G+ADL L+R LL DP W LH +A+Q EV+WPP Y Sbjct: 303 ITDAIQAEHILRTGQADLVLLARELLRDPYWPLH-AAQQLREEVAWPPQY 351 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 252 bits (644), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 139/347 (40%), Positives = 193/347 (55%), Gaps = 4/347 (1%) Query: 410 LLTPFKVRELTLNNRVVASPTLLYAAREGVAGDFHLVHLGARALGGIGLLLTEATAVSPE 469 L PFK+++++L NR+ P Y A EG D+HL H + A GG GL++ EATAVSPE Sbjct: 4 LFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAVSPE 63 Query: 470 GRMTPGCPGLWNEEQKQGWKRVVNMVHANSQARIGLQLNHAGRRGSTQLGWEQPDRPLA- 528 GR+TPGC G+W++ Q + VV + A + A G+Q+ HAGR+ S WE D A Sbjct: 64 GRITPGCTGIWSDALGQAFVPVVQAIKA-AGAVPGIQIGHAGRKASANRPWEGDDHIAAD 122 Query: 529 -AGNWPLVSASALPYLEGVSQVPAEASHEELARIREDFVAATRRAVEAGFDWLELQAGHG 587 A W +S SA+ Y G+ +VP S +++AR+R+DFV A RA EAGF+WLEL HG Sbjct: 123 DARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFAHG 182 Query: 588 CLLSSFLSPLTNQRQDEYGGTLENRLRYVLEVVKAVRAAWPAHLPLSVRISATDW-AEGG 646 L SF S NQR D YGG++ENR R++LE ++AVR WP HL L+VR ++ Sbjct: 183 YLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEYDGRDE 242 Query: 647 TTVDEAVEIARQLHAHGADLIDVSSGEVTPAQKPVYGRMFQAPFADRIRNEAGVPTIAVG 706 T+ E++ + RQ G D+I V+ G P + +G F P A R+R EA VP + Sbjct: 243 ETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPVSSAW 302 Query: 707 AITEADQVNGIIASGRADLCALSRPLLADPAWLLHESARQGWREVSW 753 + G+ DL + R L +P W + G SW Sbjct: 303 GFGTPALAEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKELGVERPSW 349 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 107/345 (31%), Positives = 157/345 (45%), Gaps = 43/345 (12%) Query: 410 LLTPFKVRELTLNNRVVASPTLLYAAREG-VAGDFHLVHLGARALGGIGLLLTEATAVSP 468 L P ++ + L NR+V +P A+ G V D + RA G GL++ EAT +SP Sbjct: 10 LFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRA--GAGLIIAEATQISP 67 Query: 469 EGRMTPGCPGLWNEEQKQGWKRVVNMVHANSQARIGLQLNHAGRRGSTQLGWEQPDRPLA 528 EG+ PG++N+ WK++ + VHA RI LQL H GR L QP L Sbjct: 68 EGKGYAWTPGIYNDAHVAAWKKITDAVHAKG-GRIFLQLWHVGRISHPDL---QPGHAL- 122 Query: 529 AGNWPLVSASALPYLEGVSQ-------VPAEASHEELARIREDFVAATRRAVEAGFDWLE 581 P+ ++ P + ++ P EL I E + A + +++AGFD +E Sbjct: 123 ----PVAPSAVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQLSMQAGFDGVE 178 Query: 582 LQAGHGCLLSSFLSPLTNQRQDEYGGTLENRLRYVLEVVKAVRAAWPAHLPLSVRISATD 641 + A +G LL FL TNQR D YGG++ENR R +LEVV+AV + P+ + +R+S Sbjct: 179 IHAANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSER-VGIRLSPIS 237 Query: 642 WAEGGTTVDEAV---EIARQLHAHGADLIDVSSGEV-TPAQKP------VYGRMFQAPFA 691 A D + QL+ + V G P + P V +F+ + Sbjct: 238 PANDIADSDPKALFSYVVEQLNRFKLVYLHVVEGATGGPREVPGGFDLQVLRDLFKGLY- 296 Query: 692 DRIRNEAGVPTIAVGAITEADQVNGIIASGRADLCALSRPLLADP 736 I N + D AS RADL A RP +A+P Sbjct: 297 --IANNG----------YDLDMALQARASNRADLVAFGRPWIANP 329 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,546,281 Number of extensions: 108715 Number of successful extensions: 344 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 336 Number of HSP's successfully gapped: 3 Length of query: 773 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 680 Effective length of database: 1,179,515 Effective search space: 802070200 Effective search space used: 802070200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)