BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0084.p (584 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 87 5e-18 gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 79 9e-16 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 122/468 (26%), Positives = 196/468 (41%), Gaps = 60/468 (12%) Query: 40 YVAGYQGAPISHLMDVLADAQDILSEHGIRFENSASEATAAATLAASVNYPLRG------ 93 +++GY+G+P+ L + L AQ L+ H ++F+ +E AA + + L G Sbjct: 59 FISGYRGSPLGGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDG 118 Query: 94 --AVTFKATVGTNVASDALANLASGGVL--GGALIIVGEDYGEGSSIMQERSHAFAMKSQ 149 A+ + G + D L ++ G GG L++ G+D+G SS + +S S Sbjct: 119 VYAMWYGKGPGVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASM 178 Query: 150 MWLLDPRPNLPCIVQAVKD----GFDLSEASSTPV----MLQMRIRSCHVHGQFFSSANR 201 + +L PC VQ D G+ +S S V + S V F R Sbjct: 179 IPML-----YPCNVQEYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIR 233 Query: 202 RPS-FTVKDALENPARDLSRIVLPPASFLHEKEKVEQRWPAAIEFIRARQLNEFFAED-A 259 PS F + + N AR LS L + E + + AA+ + RA +LN + Sbjct: 234 LPSDFVMPEGGLN-AR-LSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPK 291 Query: 260 ADVGIALQGGTYNTLIRALEQLGLSDVF-GESKIPLYVMNVAYPLVDAEFDRFCQGKRAI 318 A +GI G +Y ++ AL +LG+ + F E + L+ +++ +PL F QG I Sbjct: 292 ARLGIIASGKSYLDVLEALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEI 351 Query: 319 LVLEEGQPNFVEQNVANILRQLGLPTQLHG--KDLLP-MAGEYNTATVLAGVRK---FLE 372 LV+EE + VE L QL+ D+ P + G+++ R Sbjct: 352 LVVEEKR-QMVEYQ---------LKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTS 401 Query: 373 RYQIIEAQPAPAPAASTPRVIPIANGNAPAKSAEAKITEAKLPTLDQSVHA--RPPGFCT 430 + AQ A AA R + A +AK L ++V+ RP +C+ Sbjct: 402 KADFSVAQIARVIAARIARF-----HTSDLIKARLAFLDAKDAVLSKAVNTPPRPAYYCS 456 Query: 431 GCPERPIFTAMKLVERELGEHHISADIGCHLF--SILPPFNLGNTTMG 476 GCP ++ ++ E A IGCH+ +I P FN T MG Sbjct: 457 GCPHN---SSTRVPEGSFA----LAGIGCHVMATAIYPEFNKLTTHMG 497 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 111/458 (24%), Positives = 173/458 (37%), Gaps = 64/458 (13%) Query: 40 YVAGYQGAPISHLMDVLADAQDILSEHGIRFENSASEATAAATLAASVNYPL-RGA---- 94 ++ GY+G+P+ + A+ L I+F +E AA ++ + L +GA Sbjct: 58 FITGYRGSPLGAVDQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDG 117 Query: 95 ---VTFKATVGTNVASDAL--ANLASGGVLGGALIIVGEDYGEGSSIMQERSHAFAMKSQ 149 + + G + D AN+A GG L+I G+D+ SS +S Sbjct: 118 VFSLWYGKGPGVDRCGDVFKHANMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACG 177 Query: 150 MWLLDPRPNLPCIVQAVKD----GFDLSEASSTPVMLQMRIRSCHVHGQFFSSANRRPSF 205 + +L P VQ D G+ +S + V ++ + G R Sbjct: 178 IPVL-----YPSSVQEYLDYGLHGWAMSRYTGLWVAMKC-VTDLVESGMSVMIDPERVQI 231 Query: 206 TVKDALENPARDLSRIVLPPASFLHEKEKVEQRWPAAIEFIRARQLNEFFAEDA-ADVGI 264 + E P L+ I P E + +W AA+ + RA +LN + A +GI Sbjct: 232 QLPADFELPPDGLN-IRQPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGI 290 Query: 265 ALQGGTYNTLIRALEQLGLSDVFG-ESKIPLYVMNVAYPLVDAEFDRFCQGKRAILVLEE 323 G +Y +ALE LG+ + + I LY + + +PL F QG ILV+EE Sbjct: 291 ITAGKSYLDTRQALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEE 350 Query: 324 GQPNFVEQNVANILRQL-------------------GLPTQLHGKDLLPMAGEYNTATVL 364 + +E + L G + HG LLP E N A + Sbjct: 351 KR-QILEYQLKEELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIA 409 Query: 365 AGVRKFLERYQIIEAQPAPAPAASTPRVIPIANGNAPAKSAEAKITEAKLPTLDQSVHAR 424 + + RY A P + A ++ EA + + P D+ R Sbjct: 410 RAIATRISRY-----------FAGHPVEQQVRARVAYLEAKEATLNISSKPDPDKD---R 455 Query: 425 PPGFCTGCPERPIFTAMKLVERELGEHHISADIGCHLF 462 P FC+GCP T+ KL E G A IGCH Sbjct: 456 IPHFCSGCPHN---TSTKLPEGSRG----LAGIGCHYM 486 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,601,643 Number of extensions: 60966 Number of successful extensions: 203 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 2 Length of query: 584 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 494 Effective length of database: 1,193,720 Effective search space: 589697680 Effective search space used: 589697680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)