BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0082.p (341 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312962|ref|YP_003777054.1| AraC family transcription regul... 107 1e-24 gi|300309734|ref|YP_003773826.1| transcription regulator protein... 91 1e-19 gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 88 9e-19 gi|300312820|ref|YP_003776912.1| AraC family transcription regul... 65 6e-12 gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon... 64 3e-11 >gi|300312962|ref|YP_003777054.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 35/330 (10%) Query: 31 LFASSDLDEVRSMVGRVMKPHRLDLTGQGERLDARMHYTSLGDLSVSRLRYGSAVQIEPG 90 +F SS + + V + H DL +G+ +D + ++ L + L+YG+ V + P Sbjct: 18 VFQSSRKVDCHAQVANELSEH--DLFWKGDDVDTVLFKAAIQQLQIFMLKYGAEVIVRPR 75 Query: 91 SLDSFFLVQMPLYGMARIESGAQHIDSSAELASVLSPQEATRMTWMAGTDQLMLRLSRSL 150 + F LV M L G A IES + + ++++P+ R+ W AG++QL+L++ +L Sbjct: 76 LFNGFALVHMTLSGSAEIESDGRKVCIPQGHTALIAPKRNLRLWWQAGSEQLILKVPLAL 135 Query: 151 VERTLVGYLGHPLNEPLRFELGFRWRECAP-WQCMLSYLIDCT--------------LQH 195 E PL P L + AP W ++ L+ ++H Sbjct: 136 FEELRAAGQSAPLELPSVLLLP---PQAAPYWDLLIQSLLRVLALPEQGQGQGQGEWVRH 192 Query: 196 PDLAMHKIVVSQIEQLAASILVTSHRH---NHCEDA-----PARRSTILPRHVRRAQDFL 247 + + + ++SQ+ + S + C D+ +R +L R++R Sbjct: 193 FERSAVQFLLSQLTSTVEPVTSPSGAQRGASQCADSLVGAGKLQRLDMLERYIR------ 246 Query: 248 EAHAHEPVTAEQLAQAAGVSVRSLYAGFKDFLGVSPMQYLRDLRMERARAELMSGDSNHV 307 + P+ LA AAGVSVR+L A GV+PM LR++R++ R L++ +V Sbjct: 247 -SRLCAPLALADLAGAAGVSVRTLNALCHQQYGVAPMDLLRNIRLDAVRERLLTHPGANV 305 Query: 308 AGVALRWGFAHMGRFSNEYKQRYGESPSKT 337 A +GF H+GRFS Y++R+GE P +T Sbjct: 306 TDTAFEFGFGHLGRFSAYYRERFGELPKQT 335 >gi|300309734|ref|YP_003773826.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 7/143 (4%) Query: 203 IVVSQIEQLAASILVTSHRHNHCEDAPARRSTILPRHVRRAQDFLEAHAHEPVTAEQLAQ 262 + ++ + Q A+ +++ + HNH R PR ++RA +F+ A P+T +A Sbjct: 199 LAMANLLQAASYLILHNLPHNHSHALTRRPPAPAPRQIKRAVEFIMARLSAPITLADIAA 258 Query: 263 AAGVSVRSLYAGFKDFLGVSPMQYLRDLRMERARAELMS----GDSNHVAGVALRWGFAH 318 A +SVRSL +GF+ + ++PM++LR R+ R R +L+ D H +AL WGF H Sbjct: 259 HAAISVRSLQSGFRRYKEMTPMEFLRTQRLGRVREDLLDPAVPADIQH---IALSWGFTH 315 Query: 319 MGRFSNEYKQRYGESPSKTLRAR 341 + F YK+++GESP TL R Sbjct: 316 LYLFMRYYKKQFGESPQATLARR 338 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 88.2 bits (217), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 4/108 (3%) Query: 238 RHVRRAQDFLEAHAHEPVTAEQLAQAAGVSVRSLYAGFKDFLGVSPMQYLRDLRMERARA 297 R V A++F AH PVT L +A VS R+L F+D LG+SPM YLR LR+ R Sbjct: 222 RIVNDAREFAMAHQDSPVTVPMLCEAVHVSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRR 281 Query: 298 ELMSGDSNHVAG----VALRWGFAHMGRFSNEYKQRYGESPSKTLRAR 341 L GD G +A WGFA+ +FS +YK+ +G++PS L+AR Sbjct: 282 ALCHGDGRQAVGSIGDIAAAWGFANFSQFSCDYKKLFGQTPSAMLQAR 329 >gi|300312820|ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 199 AMHKIVVSQIEQLAASILVTSHRHNHCEDA-PARRSTILPRHVRRAQDFLEAHAHEPVTA 257 A+ V+S + A L +H N E P+R+ R V+ A D++ AHA E + Sbjct: 182 ALASTVISNV----ALALSLNHGSNDLESTLPSRQRR--ERIVQNAIDYMRAHAGEEIGI 235 Query: 258 EQLAQAAGVSVRSLYAGFKDFLGVSPMQYLRDLRMERARAEL---MSGDSNH-----VAG 309 + +A VS R+L F++ L +SP+QYL+ LR+ A E+ D H + Sbjct: 236 LDVCRATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGN 295 Query: 310 VALRWGFAHMGRFSNEYKQRYGESPSKTL 338 +A GF H RF++EYK+ +G PS+T+ Sbjct: 296 LAALCGFNHPSRFASEYKKMFGVLPSETV 324 >gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 4/113 (3%) Query: 230 ARRSTILPRHVRRAQDFLEAHAHEPVTAEQLAQAAGVSVRSLYAGFKDFLGVSPMQYLRD 289 A R T R + +A+ + A E T Q+A GVS R L F +G+ ++++R Sbjct: 226 ALRETDHKRLIDQARRLMRGDAPERATMTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRA 285 Query: 290 LRMERARAELM----SGDSNHVAGVALRWGFAHMGRFSNEYKQRYGESPSKTL 338 R+ + R L+ +G + +A WGF H+ RF+ +Y+ +GE PSKTL Sbjct: 286 ERLNQVRKALVEARRAGLEVSIGDIAADWGFWHLSRFAADYRDMFGELPSKTL 338 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,060,348 Number of extensions: 43004 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 9 Length of query: 341 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 255 Effective length of database: 1,212,660 Effective search space: 309228300 Effective search space used: 309228300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)