BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0079.p
         (186 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310013|ref|YP_003774105.1| flavin reductase domain, FMN-bi...   117   5e-28

>gi|300310013|ref|YP_003774105.1| flavin reductase domain,
           FMN-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  117 bits (293), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 1/147 (0%)

Query: 33  LRNLMGAYPTGVAIVTMRTRDGRDVGLTINSFASLSLDPPLVLWSLVNHSPNLDAFRDCA 92
            R  +  + TGV ++T R  DG  +GLT +SF S+SLDPPLVLWSL + + ++  F   +
Sbjct: 18  FRQALSQFATGVTVITTRLADGTLLGLTASSFNSVSLDPPLVLWSLGSKANSMPVFSGNS 77

Query: 93  HFAINVLADGQEELARRFATPAIADKFEGVAVAQAPEDLPVIAGALTVLVCENDHSRTVG 152
           H+ IN+L+  Q  LA++FA+  + ++FEGVA   +    P++ GA     C N      G
Sbjct: 78  HYVINILSADQAHLAQQFASK-MENRFEGVAYTLSRTGQPILEGASAWFECHNRSQYPEG 136

Query: 153 DHLLMVGRIVRTGHQPAAPLVFHAGRF 179
           DH++ VG +      P A LVFH GRF
Sbjct: 137 DHVIFVGEVEHCEADPQAALVFHGGRF 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 627,394
Number of extensions: 26418
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,241,070
Effective search space: 131553420
Effective search space used: 131553420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)