BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0073.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478...   315   1e-87
gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343...   164   2e-42
gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563...   122   1e-29

>gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478
           [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  315 bits (807), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 148/155 (95%), Positives = 153/155 (98%)

Query: 1   VPAFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPRELYKKGLAEFDAAIRQQY 60
           VP FIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPRELYKKGLAEFDAAIRQQY
Sbjct: 81  VPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPRELYKKGLAEFDAAIRQQY 140

Query: 61  GHGYVELNTQQREKMMGEFEKGDQGSLKMATIPPAALFNLLLQNVHEGYFCDPTDGGNKG 120
           GHGYVELNTQQREKMM EFEKG+QGSLKMATIPP+ALFNLLLQNVHEGYFCDPTDGGN+G
Sbjct: 141 GHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNLLLQNVHEGYFCDPTDGGNRG 200

Query: 121 MGSWKMIGFPGARADYYDWVDQYGRTYPLPPISRG 155
           MGSWKMIGFPGARADYYDWVDQYG++YPLPPISRG
Sbjct: 201 MGSWKMIGFPGARADYYDWVDQYGKSYPLPPISRG 235


>gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  164 bits (416), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 1   VPAFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPRELYKKGLAEFDAAIRQQY 60
           VP FID QM TPYG G+LWYMQGPF PD+ PE GYQL   PR++Y++G+A  +    + +
Sbjct: 85  VPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLVPRDIYRQGIAACNDWCSKNH 144

Query: 61  GHGYVELNTQQREKMMGEFEKGDQGSLKMATIPPAALFNLLLQNVHEGYFCDPTDGGNKG 120
           G  + EL+   + K +   +  D G +   T+P    FN +L N  EGYF DP  GGN+ 
Sbjct: 145 GKVFAELD---KAKQLEVLKMMDGGKISFETVPAKTFFNFMLGNTKEGYFADPMYGGNQK 201

Query: 121 MGSWKMIGFPGARADYYDWVDQYGRTYPLPPIS 153
           MG WKM+GFPGARAD+ DWVDQY   YP  P+S
Sbjct: 202 MGGWKMVGFPGARADFADWVDQYNVKYPYGPVS 234


>gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563
           [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  122 bits (306), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 4/155 (2%)

Query: 1   VPAFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPRELYKKGLAEFDAAIRQQY 60
           VP FID Q++   G G   Y QGP  PDAP   G+Q+PY P+++Y+ G+       +QQ+
Sbjct: 79  VPVFIDQQLHA--GLGSDIYQQGPHQPDAPATLGFQIPYAPQDVYRIGITLTQQISQQQH 136

Query: 61  GHGYVELNTQQREKMMGEFEKG--DQGSLKMATIPPAALFNLLLQNVHEGYFCDPTDGGN 118
           G  + +L+ + ++ ++   +K   D  +L   ++ P+  F  LL +   GY  DP  GGN
Sbjct: 137 GKPFEQLDAKDKDALLTALQKNGVDFAALGEKSMRPSQFFGQLLGDTKNGYLADPMYGGN 196

Query: 119 KGMGSWKMIGFPGARADYYDWVDQYGRTYPLPPIS 153
           K M +W  IGFPGARA Y +WVDQ+   YPL P+S
Sbjct: 197 KDMKAWVAIGFPGARAAYTEWVDQHNVKYPLGPVS 231


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.141    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 618,549
Number of extensions: 27326
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 3
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)