BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0070.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamil...   338   2e-94
gi|300313655|ref|YP_003777747.1| signal peptide protein [Herbasp...   170   1e-43

>gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  338 bits (868), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 195/237 (82%)

Query: 9   LFLIPFLSPAQTMRTEPAPLIDIVLVHGAFADGSSWSKVIALLQRKGYHVTAVQNPLSSL 68
           LFLIP    AQ M  +    IDIVLVHGAFADGSSWS+VIALLQ+KGY VTAVQNPLSSL
Sbjct: 2   LFLIPLSCAAQNMMNDKHNAIDIVLVHGAFADGSSWSQVIALLQQKGYRVTAVQNPLSSL 61

Query: 69  AADVAATSRVIARQPHPVLLVGHSWGGAVISEAGNQEKVKGLVYLSALAPDSGESVAQAL 128
           A DV+AT RVI RQPH VLLVGHSWGGAVI+ AGN  KV+GLVYLSALAPDSG+SVAQ L
Sbjct: 62  ADDVSATRRVIDRQPHEVLLVGHSWGGAVITAAGNASKVRGLVYLSALAPDSGQSVAQML 121

Query: 129 QRLQAPMQGLQPDHDGLIWLDDPKVFAQVMAHDVAVDQVRALAAVQQPIAASAFAEPVMH 188
           QRL APM G+QPD DGLIWLDD   +AQVMA DV+ +QVR LAAVQQPIAA+AF EP++H
Sbjct: 122 QRLHAPMSGMQPDADGLIWLDDAAAYAQVMAGDVSPEQVRHLAAVQQPIAAAAFGEPLVH 181

Query: 189 AAWHDKPGWYLVTQGDHALSTAVQQQFAAAMKAQTETIVSSHLSLVSHPRQVADLID 245
           AAW DKP WYL+T+GD AL TAVQ++ A  + A+T  ++SSH+SLVSHP+ VAD I+
Sbjct: 182 AAWRDKPSWYLITEGDQALPTAVQRKLATLLGARTRQLISSHMSLVSHPQVVADFIE 238


>gi|300313655|ref|YP_003777747.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score =  170 bits (430), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/216 (47%), Positives = 133/216 (61%), Gaps = 3/216 (1%)

Query: 31  IVLVHGAFADGSSWSKVIALLQRKGYHVTAVQNPLSSLAADVAATSRVIARQPHPVLLVG 90
           +V+VHGAFADGS W+KVI LLQ KG  VTAVQNPL+SLA DVAA  R I  QP  V+LVG
Sbjct: 39  VVIVHGAFADGSDWAKVIPLLQAKGVKVTAVQNPLTSLADDVAAARRAIDNQPGKVVLVG 98

Query: 91  HSWGGAVISEAGNQEKVKGLVYLSALAPDSGESVAQALQRLQAP--MQGLQPDHDGLIWL 148
           HSWGG VI+EAGN +KV  LVY++A APD+G++     + L  P  +  L  D  G   L
Sbjct: 99  HSWGGTVITEAGNHDKVASLVYVAAFAPDAGQATGDLGKDLPVPPGIAKLSVDKAGFASL 158

Query: 149 DDPKVFAQVMAHDVAVDQVRALAAVQQPIAASAFAEPVMHAAWHDKPGWYLVTQGDHALS 208
               + A   A DV   Q   +AA Q PIA  AF + V  AAW  +P WY+V+  D  + 
Sbjct: 159 PPAALAAD-FAQDVPAKQAAVMAATQGPIAMKAFGDKVETAAWKTRPSWYIVSTKDRMIQ 217

Query: 209 TAVQQQFAAAMKAQTETIVSSHLSLVSHPRQVADLI 244
            A+++ FA  + A+T  + +SH+   S P  VA +I
Sbjct: 218 PALERAFAKQINAKTTELPASHVPQQSRPADVAKVI 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 838,107
Number of extensions: 34092
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 3
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)