BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0067.p (208 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodie... 348 3e-97 gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphod... 167 8e-43 gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodie... 153 1e-38 gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodie... 95 4e-21 gi|300312299|ref|YP_003776391.1| acyl carrier protein phosphodie... 60 9e-11 >gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 208 Score = 348 bits (892), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 170/208 (81%), Positives = 187/208 (89%) Query: 1 MKILHLDTSILADASASRVLSAAIVDHLQARHPQARVSVRDLVSAPVAHLDGAIAAGFRQ 60 MKILHLD+SILA+ASASRVLSAA+V+ L+ HP A+VSVRDL +AP+AHLDG IAAGFRQ Sbjct: 1 MKILHLDSSILAEASASRVLSAAVVEELRILHPTAQVSVRDLAAAPIAHLDGPIAAGFRQ 60 Query: 61 SGGSVTDAGVLAEHALSETLVSEFLDSDVIVLGVPMYNFSVPSQLKAWLDRVAQPGRTFR 120 G + V AE ALSETLVS+FL+SDVIVLGVPMYNFS+PSQLKAWLDRVAQPGRTFR Sbjct: 61 PGANHASPEVRAEQALSETLVSQFLNSDVIVLGVPMYNFSIPSQLKAWLDRVAQPGRTFR 120 Query: 121 YTEQGPLGLSGDKAVIVASTRGGMYSSGPAAVMDHQESYLKAFFSFLGIQRVRFVRAERL 180 YTE GPLGLSG+KAVI+ASTRGGMYSSGPAAVMDHQE+YLKAFF FLGI+RVRFVRAERL Sbjct: 121 YTENGPLGLSGEKAVIIASTRGGMYSSGPAAVMDHQEAYLKAFFGFLGIERVRFVRAERL 180 Query: 181 TKGAELRSQSMRVALDEIPSVVADLLAN 208 KGAELRSQSMR ALDE+PSVVA L AN Sbjct: 181 IKGAELRSQSMRAALDEVPSVVAGLFAN 208 >gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 203 Score = 167 bits (422), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 92/184 (50%), Positives = 114/184 (61%), Gaps = 3/184 (1%) Query: 1 MKILHLDTSILADASASRVLSAAIVDHLQARHPQARVSVRDLVSAPVAHLDGAIAAGFRQ 60 MK+LHLDTSIL + S SR LSA IV HL++ P V RDL +A HL A F Sbjct: 1 MKLLHLDTSILGEHSVSRQLSADIVAHLRSLQPDLEVIYRDLAAAAPRHLSAEHLAAF-- 58 Query: 61 SGGSVTDAGVLAEHALSETLVSEFLDSDVIVLGVPMYNFSVPSQLKAWLDRVAQPGRTFR 120 G V D + A+ AL + + E L +D++V+G PMYNFS+PSQLKAW+DRVA G TF Sbjct: 59 GGAEVDDPALRADLALGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTTFA 118 Query: 121 YTEQGPLGLSGDKAVIVASTRGGMYSSGPA-AVMDHQESYLKAFFSFLGIQRVRFVRAER 179 YT+ GP GL + +AS RGG Y+ G A A +DHQE YL+ FLGI V VRAE Sbjct: 119 YTDAGPEGLLKGRRAYIASVRGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVRAEG 178 Query: 180 LTKG 183 + G Sbjct: 179 VAMG 182 >gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 202 Score = 153 bits (386), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/203 (44%), Positives = 125/203 (61%), Gaps = 7/203 (3%) Query: 3 ILHLDTSILADASASRVLSAAIVDHLQARHPQARVSVRDLVSAPVAHL-DGAIAAGFRQS 61 +LH+D+S + S SR L+A+ V QA++P +V RDL + + HL + + A F + Sbjct: 4 LLHIDSSARSGGSISRQLTASFVSQWQAKNPGGKVVHRDLAANALPHLSESMLGAYFTPA 63 Query: 62 GG-SVTDAGVLAEHALSETLVSEFLDSDVIVLGVPMYNFSVPSQLKAWLDRVAQPGRTFR 120 S A V+ + S+ LV E L +D IV+GVPMYNF+ PS LKAW+D V + GRTF+ Sbjct: 64 DARSAEQAEVIKQ---SDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTFK 120 Query: 121 YTEQGPLGL-SGDKAVIVASTRGGMYSSGPAAVMDHQESYLKAFFSFLGIQRVRFVRAER 179 YTE GP+GL +G KAVI+ S RGGMYS GP +D Q YLK+ F+GI V V AE Sbjct: 121 YTETGPVGLVTGKKAVIILS-RGGMYSEGPMEALDFQGKYLKSALGFIGITDVELVVAEG 179 Query: 180 LTKGAELRSQSMRVALDEIPSVV 202 ++ G E Q++ A +I + V Sbjct: 180 VSMGEEAAKQAVASAEAKINASV 202 >gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 205 Score = 94.7 bits (234), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 5/175 (2%) Query: 12 ADASASRVLSAAIVDHLQARHPQARVSVRDLVSAPVAHLDGAIAAGFRQSGGSVTDAGVL 71 AD+ +SR + I + ++A + VRDL++ P+ H+ A G R + + Sbjct: 14 ADSLSSR-FATEIAEGIKASS-AGTLKVRDLIADPLPHITSAYIQG-RLTAPENRTPDQV 70 Query: 72 AEHALSETLVSEFLDSDVIVLGVPMYNFSVPSQLKAWLDRVAQPGRTFRYTEQGPLG-LS 130 A AL++ LV E +D++V+G M NF SQLKAW D V P TF Y + GP G L+ Sbjct: 71 AAVALAQELVDELKAADIVVIGSGMINFGPSSQLKAWFDHVTWPSVTFAYDDNGPKGLLT 130 Query: 131 GDKAVIVASTRGGMYSSGPAAVMDHQESYLKAFFSFLGIQRVRFVRAERLTKGAE 185 G K +VA+ GG++S G A D Q +YL SF+G+ V V E G + Sbjct: 131 GKKTYLVAAA-GGVFSEGIWAAFDFQSNYLLHLLSFIGLSDVEMVCVEGTVFGPD 184 >gi|300312299|ref|YP_003776391.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 208 Score = 60.5 bits (145), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 10/177 (5%) Query: 1 MKILHLDTSILADASASRVLSAAIVDHLQARHPQARVSVRDLVSAPVAHLDGAIAAGFRQ 60 MKILH+++S S S L+ + L+ +H V DL S + G +A G + Sbjct: 1 MKILHINSSSRGADSRSLQLTEVFLRELE-KHKAIEVDRFDLFSGELPAF-GELAVGAKM 58 Query: 61 SGGSVTDAGVLAEHALS--ETLVSEFLDSDVIVLGVPMYNFSVPSQLKAWLDRVAQPGRT 118 + + +A +HA + + + F +D V+ VP++N +P LK ++D V QPG Sbjct: 59 AMFTGAEATSEQKHAWASIKAVFDRFASADAYVINVPLWNNGLPYVLKQFIDVVTQPGWA 118 Query: 119 FRYT-EQGPLG-LSGDKAVIVASTRGGMYSSGPAAVM--DHQESYLKAFFSFLGIQR 171 F + E G G L KA I+ ++ G+Y G D YL + F+GI+ Sbjct: 119 FGFDLENGYSGLLKNRKACIIHAS--GVYHPGIPTNFGSDFSTPYLTDWLKFVGIEE 173 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 655,140 Number of extensions: 27203 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 5 Length of query: 208 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 127 Effective length of database: 1,236,335 Effective search space: 157014545 Effective search space used: 157014545 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)