BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0051.p
         (521 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide de...   120   3e-28

>gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide
           dehydrogenase large subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 759

 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 151/527 (28%), Positives = 225/527 (42%), Gaps = 55/527 (10%)

Query: 1   MAQIVGEELDADPARFVV---HNAPANDQYKVMDIGIRITGGSMSVRTSYPTMRRVGALA 57
           +AQIV EEL     +  +   H   A +Q   +         S +++ S   +R+  A A
Sbjct: 82  LAQIVAEELSLSMEQVSMILGHTEEAPNQGPTI--------ASATIQISAMPLRKAAAQA 133

Query: 58  RHLLLQAAANQWQVPLESLTTEPGRVMHA-ASGRSISYGELA-PKALDLPNPPLETIKLK 115
           R  LL  AA +W  P+  L  E G ++ A  +GR+ISY EL   + + L   P E + LK
Sbjct: 134 REHLLAMAAARWATPVGRLRVEAGCIIDADVAGRTISYFELLRGQRIVLTLEPGE-VPLK 192

Query: 116 DDKQFRWIGKPLARLDVLDKSTGRAQYGIDTQVENMLQAAVQHAPRLGLEVGSIRNEAEV 175
              Q+  +G+   R+D+  K   +  Y  D +V  ML   V   P  G + G        
Sbjct: 193 PVSQYTLVGRSSQRVDIPAKVRAQPVYVHDVRVPGMLHGRVVRPPHPGRDGGDFVG---- 248

Query: 176 RKMTGV--HSVHRLPGAVAVV---------AERWWNAKRAVEALQVDWSDPGPAPDRRYV 224
           R +  V   SV  +PG VAVV         AER   A+RA+  L+V W    P P     
Sbjct: 249 RSLLAVDRQSVAHIPGLVAVVVEGDFIGVVAEREEQAQRAMRELKVQWKSIPPLP----- 303

Query: 225 PADFSTEGFAEQLAKSTAAVDEAETEGDVTKALAGAKTVVQASYRSQYLNHAQLEPPSAT 284
           P D        +L    A   E   +GD   A A A   ++ +Y   Y  HA + P  A 
Sbjct: 304 PMD----DLEARLRSLPARRRELVRQGDPDAASASAAGHIERTYVWPYQLHASIGPSCAV 359

Query: 285 ARFNADGTLEMWLPNQAPEMFQAAIAKQTGLPAEKITIHSPLLGGFFGRHFLYETAMPFP 344
           A +  +G L +W   Q P + +  +++   L    I +      G +GR+   +      
Sbjct: 360 ADWRPEG-LTVWSGTQNPHVMRIDLSRLCDLDEGSIEVIRLEASGCYGRNCADDVVA--- 415

Query: 345 QAIQLAKAVGRPVKVIWSREEEFARDTMRPMAVVQFRAGLDDKG----FPIAIEAISATE 400
            A  L++AVGRPV+V  +RE+E A +      ++    G+D +G    +       S   
Sbjct: 416 DAALLSRAVGRPVRVQLTREQEHAWEPKGAAQLMDVCGGVDAQGRLSHYRFQTRYPSNDA 475

Query: 401 GPTESIANKRNKIDPTALE---GLAGKSYQFAHKRIGQRFVKNPPIV--GYWRSVGNSMN 455
                +   +   +P  LE     A   Y + H +I    V   PIV  G+ R V    N
Sbjct: 476 PVLALLLTGKIAPEPRVLEMGDRTAVPPYAYPHMQIDCDDVA--PIVRAGWLRGVSAMPN 533

Query: 456 DFFYEAFLDEIADKGGQDPLDVRLRLLQGNDRLTTLLKAAVDLSGGW 502
            F +E F+DE+A+  G D L  RL  L  + R + LL+ AV    GW
Sbjct: 534 SFAHEVFIDELAELAGADRLAFRLAHLP-DQRASELLQ-AVAHKAGW 578


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,735,605
Number of extensions: 74192
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 431
Effective length of database: 1,193,720
Effective search space: 514493320
Effective search space used: 514493320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)