BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0049.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s...   118   3e-28
gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...    65   4e-12

>gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase
           subunit alpha oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score =  118 bits (295), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 88/142 (61%), Gaps = 2/142 (1%)

Query: 3   LQINDKTYQITSDAETPLLWVIRDELGMTGTKYGCGLAQCGACSVMVDGEVLRSCVMPVG 62
             +N     +   A+ PLL V+R++L + G K+GCGL +CGAC+V+VDG   RSCV+P+ 
Sbjct: 9   FHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCVIPLA 68

Query: 63  AMAGRKVTTIEAVTADPVGQKVVDAWVRHQVPQCGYCQSGQVMAATALLKQVAQPSDEQI 122
            +A R VTT++ +  D     V  A++  Q  QCGYC +G +M   ALL +   PS+++I
Sbjct: 69  GVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTPSEDEI 128

Query: 123 VGAM-VNLCRCGTY-NAIKAAM 142
              +  NLCRCGT+   ++AA+
Sbjct: 129 RHELDFNLCRCGTHVEILRAAL 150


>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 65.1 bits (157), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 1   MELQINDKTYQITSDAET-PLLWVIRDELGMTGTKYGCGLAQCGACSVMV---DGEVL-- 54
           ++     +T+ +   + T  +L  +R++L  TGTK GC    CGAC+V+V    GE L  
Sbjct: 8   IQFYFRGQTHSVAGHSPTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELQGEQLAL 67

Query: 55  ---RSCVMPVGAMAGRKVTTIEAVT-ADPVGQKVVDAWVRHQVPQCGYCQSGQVMAATAL 110
               +C+  +  + GR + T+E +  AD     V  A V     QCG+C  G VM+   L
Sbjct: 68  KTVNACIQFLPTLDGRALFTVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGFVMSLWGL 127

Query: 111 LKQVAQ----PSDEQIVGAMV-NLCRCGTYNAI 138
             +  Q    PS  +I  A+  NLCRC  Y  I
Sbjct: 128 YLRHEQDGVTPSKREIDDALSGNLCRCTGYRPI 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.127    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 489,652
Number of extensions: 16000
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)