BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0045.p (518 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 1014 0.0 gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [H... 434 e-123 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 397 e-111 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 384 e-108 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 362 e-101 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/517 (96%), Positives = 509/517 (98%) Query: 1 MSEYLLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTW 60 MSEYLLEMKGIVKSFGGVRAL+GIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTW Sbjct: 1 MSEYLLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTW 60 Query: 61 DGEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPA 120 +GEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPA Sbjct: 61 EGEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPA 120 Query: 121 MYRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASE 180 MYRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASE Sbjct: 121 MYRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASE 180 Query: 181 IAVLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIATTPMQDMDVDKIITQ 240 I VLLKIIKDLKARGVACVYISHKLDEVAE+CDTISVIRDGKHIATTPMQ+MDVDKIITQ Sbjct: 181 IGVLLKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIITQ 240 Query: 241 MVGREITAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLVG 300 MVGREITAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLVG Sbjct: 241 MVGREITAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLVG 300 Query: 301 AGRTELVSAIFGAYRGRYEGQVLLEGKPADTGSPLKSIRQGLCMVPEDRKHHGIVPDLDV 360 AGRTELVSAIFGAYRGRYEGQVLLEGKPADT SPLKSIR+GLCMVPEDRKHHGIVPDLDV Sbjct: 301 AGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRGLCMVPEDRKHHGIVPDLDV 360 Query: 361 GQNITLTVLNRFSRGTRIDSSAELKTIQGEISRLRVKTASPFLPITGLSGGNQQKAVLSK 420 GQNITLTVLNRFSRG+RID SAELKTIQ EI R+RVKTA+PFLPIT LSGGNQQKAVL+K Sbjct: 361 GQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPFLPITSLSGGNQQKAVLAK 420 Query: 421 MLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKLGLAIIMVSSELAEVLGVSDRVLVI 480 MLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAK GLAIIMVSSELAEVLGVSDRVLVI Sbjct: 421 MLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGVSDRVLVI 480 Query: 481 GEGKLRGDFVNDNLSQETVLAAAINQPVPQASPRAVA 517 GEG+LRGDFVNDNLSQETVLAAAINQPVPQA+PRA A Sbjct: 481 GEGRLRGDFVNDNLSQETVLAAAINQPVPQATPRAAA 517 >gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 434 bits (1116), Expect = e-123, Method: Compositional matrix adjust. Identities = 238/504 (47%), Positives = 341/504 (67%), Gaps = 11/504 (2%) Query: 5 LLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 64 +LEM+GI KSF GV+AL+ +++ +R GE + GENGAGKSTLMK+LSGVYPHG++ G+I Sbjct: 4 ILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSGDI 63 Query: 65 LWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAMYRR 124 ++ G+ +RD+E GI+IIHQEL LVP LSV EN+F+G+E GG +++ Y R Sbjct: 64 VYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNE-QARGGVIDWEQSYVR 122 Query: 125 AEELMRELNMPDINVALPVSQYGG---GHQQLVEIAKALNKDARLLILDEPSSSLTASEI 181 A+EL+ ++ + + P++Q G G QQL+EIAKAL+K+ +LLILDEP++SL S+ Sbjct: 123 AKELLAKVGLKE----SPLTQVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDS 178 Query: 182 AVLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIAT--TPMQDMDVDKIIT 239 LL+++ +LK +G+A + ISHKL+E++++ D+I+V+RDG + T + + D+II Sbjct: 179 DALLELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAEPISEDRIIQ 238 Query: 240 QMVGREITAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLV 299 MVGRE+ YP+R+ IGEV+ E R+ + + R + DV+ SVR GEI+GIAGL+ Sbjct: 239 HMVGREMADRYPQRDPQIGEVIFEVRDWRVHHPLHTDRLAIKDVNMSVRAGEIVGIAGLM 298 Query: 300 GAGRTELVSAIFG-AYRGRYEGQVLLEGKPADTGSPLKSIRQGLCMVPEDRKHHGIVPDL 358 GAGRTEL +IFG AY + GQ L GK D + K+I +G+ V EDRK G+V + Sbjct: 299 GAGRTELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAIAKGIAYVTEDRKGDGLVLEE 358 Query: 359 DVGQNITLTVLNRFSRGTRIDSSAELKTIQGEISRLRVKTASPFLPITGLSGGNQQKAVL 418 D+ +NI+L L S T ID + E K ++R++ +S + LSGGNQQK VL Sbjct: 359 DIKKNISLANLGGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVL 418 Query: 419 SKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKLGLAIIMVSSELAEVLGVSDRVL 478 SK L +QP+VLILDEPTRG+DVGAK EIY +IS+LA G IIM+SSE+ E+LG+ DR+ Sbjct: 419 SKWLFSQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIY 478 Query: 479 VIGEGKLRGDFVNDNLSQETVLAA 502 V+ EG+ G +QE ++ A Sbjct: 479 VMNEGQFVGHLPKAEATQENIMRA 502 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust. Identities = 229/512 (44%), Positives = 328/512 (64%), Gaps = 17/512 (3%) Query: 5 LLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 64 ++ ++ + K F GV ALD ++ GE L GENGAGKSTLMKILSGVY + G+I Sbjct: 22 VIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDS--GDI 79 Query: 65 LWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGG-RMNYPAMYR 123 L DGKP++ R +A GI IIHQEL L+ LS A+NIF+G E G ++ + R Sbjct: 80 LLDGKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNR 139 Query: 124 RAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIAV 183 +A + + + D++ + PV + QQ+VEIAKAL+ D+R+LI+DEP+++L +EIA Sbjct: 140 QAAAIFARMRL-DMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAE 198 Query: 184 LLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIATTPMQDMDVDKIITQMVG 243 L +II+DL+A+GV VYISHK+DE+ +I D +SV+RDGK+IAT PMQ+ +D II+ MVG Sbjct: 199 LFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMVG 258 Query: 244 REITA---MYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLVG 300 R + + P+ + +VVLE R + R + + DVSF++R+GEILG AGL+G Sbjct: 259 RALDGEQRIPPDTSR--NDVVLEVRGLN-------RGRAIRDVSFTLRKGEILGFAGLMG 309 Query: 301 AGRTELVSAIFGAYRGRYEGQVLLEGKPADTGSPLKSIRQGLCMVPEDRKHHGIVPDLDV 360 AGRTE+ AIFGA G++++ G A SP ++ G+ + EDRKH G+ +DV Sbjct: 310 AGRTEVARAIFGA-DPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDV 368 Query: 361 GQNITLTVLNRFSRGTRIDSSAELKTIQGEISRLRVKTASPFLPITGLSGGNQQKAVLSK 420 NI L+ + RF+R +D A + Q + +L +KT S LSGGNQQK V++K Sbjct: 369 QANIALSSMGRFTRVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAK 428 Query: 421 MLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKLGLAIIMVSSELAEVLGVSDRVLVI 480 LL +L DEPTRG+DVGAK+EIY+L+ LA+ G AI+M+SSEL EVL +S RVLV+ Sbjct: 429 WLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVM 488 Query: 481 GEGKLRGDFVNDNLSQETVLAAAINQPVPQAS 512 EG++ G+ + +QE ++ A + AS Sbjct: 489 CEGRITGELARADATQEKIMQLATQRESAVAS 520 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 384 bits (987), Expect = e-108, Method: Compositional matrix adjust. Identities = 215/513 (41%), Positives = 315/513 (61%), Gaps = 15/513 (2%) Query: 5 LLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 64 LL+M+GI KSFG AL + + IRPGE L GENGAGKSTLMK+LSGV H GEI Sbjct: 6 LLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGV--HAPDQGEI 63 Query: 65 LWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAMYRR 124 L DG+P+ + AAGI +I+QEL + P +SVA N+FMG E+ G +++ AM R Sbjct: 64 LLDGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHAAMRSR 123 Query: 125 AEELMRELNM----PDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASE 180 + ++R+L D+ L +++ QQ VEIA+AL +R++I+DEP+++L+ E Sbjct: 124 TDAVLRQLGAGFGASDLAGRLSIAE-----QQQVEIARALVHRSRIVIMDEPTAALSERE 178 Query: 181 IAVLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIATTPMQDMDVDKIITQ 240 L +++ L+ G+A +YISH++ EV + D ++V+RDG + ++D ++I+ Sbjct: 179 TEQLFNVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQM 238 Query: 241 MVGREITAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLVG 300 MVGR ++ Y + A + A+ T + ++ SF VR GE+LG AGLVG Sbjct: 239 MVGRSLSEFYQHQRIAPADA---AQLPTVMQVRALAGGKIRPASFDVRAGEVLGFAGLVG 295 Query: 301 AGRTELVSAIFGAYRGRYEGQVLLEGKPADTGSPLKSIRQGLCMVPEDRKHHGIVPDLDV 360 AGRTEL +FGA R G +LLEG+P P ++R G+ VPEDRK G+ + V Sbjct: 296 AGRTELARLLFGA-DPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMAV 354 Query: 361 GQNITLTVLNRFSRGTRIDSSAELKTIQGEISRLRVKTASPFLPITGLSGGNQQKAVLSK 420 N T+ V +R +R + S + + I RL VK A P P+ LSGGNQQK +L++ Sbjct: 355 AANATMNVASRHTRLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVLLAR 414 Query: 421 MLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKLGLAIIMVSSELAEVLGVSDRVLVI 480 L PKVLILDEPTRGVD+ AK+EIY+L+ LA G+A++++SSEL EV+G+ DRVLV+ Sbjct: 415 WLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVM 474 Query: 481 GEGKLRGDFVNDNLSQETVLAAAINQPVPQASP 513 EG + G+ ++QE ++ A + VP+ +P Sbjct: 475 REGMITGELAGAAITQENIMRLATDTNVPRTAP 507 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust. Identities = 203/518 (39%), Positives = 310/518 (59%), Gaps = 18/518 (3%) Query: 1 MSEYLLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSG-VYPHGT 59 M +L++ GI K+FG V L G+D+++R GE L GENGAGKSTLMKIL G V P Sbjct: 1 MEAAMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDA- 59 Query: 60 WDGEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYP 119 GEI DG+P + S R A G+ ++ QE L+P L +N+F+ E+ G + Sbjct: 60 --GEIRIDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRA 117 Query: 120 AMYRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTAS 179 AM RRA+E++ +L + I + +PV + QQ VEIAKAL DAR+L+LDEP+++LT + Sbjct: 118 AMRRRAQEIIGQLGVA-IPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPA 176 Query: 180 EIAVLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIATTPMQDMDVDKIIT 239 E+ L +++ L+A+GVA ++ISH L+E+ EICD I+V+RDG ++AT ++D +++ Sbjct: 177 EVEHLFAVMRSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVE 236 Query: 240 QMVGREITAMYPER----NHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGI 295 MVGR I +P + GEVVLE + R++ F +RRGEILG Sbjct: 237 MMVGRRIENCFPPKPAKGGEGEGEVVLEVHALQL-------RRQAPVSQFQLRRGEILGF 289 Query: 296 AGLVGAGRTELVSAIFGAYRGRYEGQVLLEGKPADTGSPLKSIRQGLCMVPEDRKHHGIV 355 AGLVG+GRTE V A+ GA+ ++ + G P P ++++ G+ ++PE RK G++ Sbjct: 290 AGLVGSGRTETVLAMLGAH-AALSCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLI 348 Query: 356 PDLDVGQNITLTVLNRFSR-GTRIDSSAELKTIQGEISRLRVKTASPFLPITGLSGGNQQ 414 + N++L ++ G +D E + + + R+RVK + + LSGGNQQ Sbjct: 349 TSFSILHNVSLNNYGKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGGNQQ 408 Query: 415 KAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKLGLAIIMVSSELAEVLGVS 474 K V+++ + KVLI DEPTRG+DVGAK+EIY+L+ E G +I+M+SSEL EV+G++ Sbjct: 409 KVVIARWINHAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMA 468 Query: 475 DRVLVIGEGKLRGDFVNDNLSQETVLAAAINQPVPQAS 512 DRV V G + + ++ E ++ A + A+ Sbjct: 469 DRVCVFRGGGIVATLEGEAVNAEEIMTHATTGRIRHAA 506 Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 8/232 (3%) Query: 283 VSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQVLLEGKPADTGSPLKSIRQGL 342 V VR GE+ + G GAG++ L+ + G R G++ ++G+P S +I G+ Sbjct: 24 VDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPD-AGEIRIDGQPCRFDSYRAAIAGGV 82 Query: 343 CMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGTRIDSSAELKTIQGEISRLRVKTASPF 402 +V ++ ++P LD N+ L R SR + +A + Q I +L V A P Sbjct: 83 GVVFQE---FSLIPYLDAVDNMFLARELR-SRWGWLQRAAMRRRAQEIIGQLGV--AIPL 136 Query: 403 -LPITGLSGGNQQKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKLGLAII 461 +P+ LS QQ ++K L ++L+LDEPT + ++ ++ L G+AII Sbjct: 137 DVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFAVMRSLRAQGVAII 196 Query: 462 MVSSELAEVLGVSDRVLVIGEGKLRGDFVNDNLSQETVLAAAINQPVPQASP 513 +S L E+ + DR+ V+ +G + Q ++ + + + P Sbjct: 197 FISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEMMVGRRIENCFP 248 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,611,080 Number of extensions: 71337 Number of successful extensions: 928 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 598 Number of HSP's successfully gapped: 217 Length of query: 518 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 429 Effective length of database: 1,198,455 Effective search space: 514137195 Effective search space used: 514137195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)