BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0038.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypepti...   569   e-163
gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidas...   210   1e-55

>gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine
           carboxypeptidase [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score =  569 bits (1467), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 289/371 (77%), Positives = 307/371 (82%), Gaps = 34/371 (9%)

Query: 27  LILPGLRRAGMVVRLLMCSVLLLALTALSGKVSEAQAAGSTAGKHRAASSGAKGRNRSVR 86
           L L  LRRAG V RL+MCS+L+L L  L+GK SEAQAAGS+AGKHR+A++GAKGR R+VR
Sbjct: 15  LFLSLLRRAGAVARLMMCSLLVLMLATLAGKFSEAQAAGSSAGKHRSAATGAKGRKRTVR 74

Query: 87  KKAA----------------------------------LPAKARTPARGRRRGLPRCGFT 112
           KKA+                                      A  PA G+   L RCGFT
Sbjct: 75  KKASADKPARTARSRRALRRPAAAAAVAGTAATAATAATATPASAPASGKPELLARCGFT 134

Query: 113 EASRRHIFSRGVYVLDEETNTPLFERNADTVAPIASVTKLMTAIVWLDQKSLPMANRLEV 172
           EASRRHIFSRGVYVLDE+T TPLFERNADTVAPIASVTKLMTAIVWLDQK L M NRLEV
Sbjct: 135 EASRRHIFSRGVYVLDEQTGTPLFERNADTVAPIASVTKLMTAIVWLDQKQLAMGNRLEV 194

Query: 173 TEDDLDNLKFTHSRLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFIAAMNAR 232
           TEDDLD LKFTHSRL VGASLSRADMLHIALMSSENRAAAA+SRDYPGGRPAFIAAMNAR
Sbjct: 195 TEDDLDTLKFTHSRLGVGASLSRADMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNAR 254

Query: 233 AQALGMPHTHFENGTGLSPENVSTPRELAELVKAANRYQLIRNDSLDKQKIINIGRGQLQ 292
           AQALGM HTHFEN TGLSPENVSTPRELA LV+AANRYQLIRNDSLDKQK+INIGRGQLQ
Sbjct: 255 AQALGMSHTHFENATGLSPENVSTPRELAALVQAANRYQLIRNDSLDKQKMINIGRGQLQ 314

Query: 293 YINSNRLIRYGQVNATVQKTGFINESGHNMVLRLLVHDRRPVIVTMLGSGTADGSRLDGV 352
           YINSNRLIRYGQVNA+VQKTGFINESGHNMVLR+LVHDRRPVIVTMLGSG+ADGSRLDGV
Sbjct: 315 YINSNRLIRYGQVNASVQKTGFINESGHNMVLRMLVHDRRPVIVTMLGSGSADGSRLDGV 374

Query: 353 RIAKWLNCSLN 363
           RIAKWLNCSLN
Sbjct: 375 RIAKWLNCSLN 385


>gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score =  210 bits (535), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 114/233 (48%), Positives = 158/233 (67%), Gaps = 2/233 (0%)

Query: 126 VLDEETNTPLFERNADTVAPIASVTKLMTAIVWLDQKSLPMANRLEVTEDDLDNLKFTHS 185
           V+D+  +  LFE+N+    PIASVTKLMTA+V ++ +   M   L VT+DD+D  K + S
Sbjct: 117 VIDQANSQVLFEKNSGVALPIASVTKLMTALVVVEARQ-NMEEVLTVTDDDVDREKHSSS 175

Query: 186 RLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFIAAMNARAQALGMPHTHFEN 245
           RL VGA+LSR DMLHIALMSSENRAA+A+ R+YPGG PAF+AAMNA+A++LGM  T + +
Sbjct: 176 RLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVD 235

Query: 246 GTGLSPENVSTPRELAELVKAANRYQLIRNDSLDKQKIINIGRGQLQYINSNRLIRYGQV 305
            TGLS +NV++ R+LA+LV AA  Y +IR  S D + ++      LQY +SNRL    + 
Sbjct: 236 STGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEW 295

Query: 306 NATVQKTGFINESGHNMVLRLLVHDRRPVIVTMLGSGTADGSRLDGVRIAKWL 358
           +  +QKTGFINE+GH +V+   + + RP+++  L S        D  R+ KWL
Sbjct: 296 DIGLQKTGFINEAGHCLVMYTRI-EGRPIVMVFLDSKGRLSHVGDAARMRKWL 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,073,182
Number of extensions: 43243
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 3
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)