BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0037.p
         (375 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313784|ref|YP_003777876.1| UDP-N-acetylglucosamine enolpyr...   729   0.0  
gi|300313357|ref|YP_003777449.1| UDP-N-acetylglucosamine 1-carbo...   134   2e-32

>gi|300313784|ref|YP_003777876.1| UDP-N-acetylglucosamine
           enolpyruvyl transferase [Herbaspirillum seropedicae
           SmR1]
          Length = 433

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/375 (96%), Positives = 368/375 (98%)

Query: 1   VLGSEVKVDYASGVLELHHRDTHFDPKVHHLPEEMRSSIMLVPPLLARFGVARLENDVKG 60
           VLGSEV VDYASGVLELHHRDTHFDPK+HHLPEEMRSSIMLVPPLLARFGVARLENDVKG
Sbjct: 59  VLGSEVTVDYASGVLELHHRDTHFDPKLHHLPEEMRSSIMLVPPLLARFGVARLENDVKG 118

Query: 61  CTLGVREIDPHVEVFQRFGARVESSPDSLIIRTGGRMQANHHWLDYASVTTTENFVLCAA 120
           CTLGVREIDPHVEVFQRFGA+VESSPDSLIIRT GRMQAN HWLDYASVTTTENFVLCAA
Sbjct: 119 CTLGVREIDPHVEVFQRFGAQVESSPDSLIIRTPGRMQANDHWLDYASVTTTENFVLCAA 178

Query: 121 AAEGESVLTNAASEPHVQEFCRFMVMMGVQIDGLGTSRVTVRGGQQLGGGEFRFDEDFHE 180
           +AEG SVLTNAASEPHVQEFCRFM M+GVQI+GLGTSRV+VRGG  LGGGEFRFDEDFHE
Sbjct: 179 SAEGTSVLTNAASEPHVQEFCRFMAMLGVQIEGLGTSRVSVRGGGPLGGGEFRFDEDFHE 238

Query: 181 IATFLAMGAITGGQVRVRNSAPEQFPLIDRTFAKFGVEVVHENGWSHTRQNGPLKVVKPF 240
           IATFLAMGAITGGQVRVRNSAP+QFPLIDRTFAKFGVEVVHENGWSHTRQNGPLKVVKPF
Sbjct: 239 IATFLAMGAITGGQVRVRNSAPQQFPLIDRTFAKFGVEVVHENGWSHTRQNGPLKVVKPF 298

Query: 241 TSNILTKVEAAPWPYLPVDLLPIFIALGVKAEGNTMFWNKIYDGAMGWSSELSKFGAHVF 300
           TSNILTKVEAAPWPYLPVDLLPIFIALGVKAEGNTMFWNKIYDGAMGWSSELSKFGAHVF
Sbjct: 299 TSNILTKVEAAPWPYLPVDLLPIFIALGVKAEGNTMFWNKIYDGAMGWSSELSKFGAHVF 358

Query: 301 LGDPHRLITFGGLPLSPASVESPYIIRVAIALFMVAASIEGRSEIRNALPIRRAHPKFVE 360
           LGDPHRLITFGGLPLSPASVESPYIIRVAIALFMVAASIEGRSEIRNALPIRRAHPKFVE
Sbjct: 359 LGDPHRLITFGGLPLSPASVESPYIIRVAIALFMVAASIEGRSEIRNALPIRRAHPKFVE 418

Query: 361 NLRSLGAVVDWVEED 375
           NLRSLGAVVDWVEED
Sbjct: 419 NLRSLGAVVDWVEED 433


>gi|300313357|ref|YP_003777449.1| UDP-N-acetylglucosamine
           1-carboxyvinyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 416

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 162/352 (46%), Gaps = 27/352 (7%)

Query: 29  HHLPEEMRSSIMLVPPLLARFGVARLENDVKGCTLGVREIDPHVEVFQRFGARVESSPDS 88
           + L + MR+SI+++ PLLARFG A++     GC +G R +D H++  Q  GA +      
Sbjct: 85  YELVKTMRASILVLGPLLARFGQAKVSLP-GGCAIGSRPVDQHIKGLQAMGAEIHIEG-G 142

Query: 89  LIIRTGGRMQANHHWLDYASVTTTENFVLCAAAAEGESVLTNAASEPHVQEFCRFMVMMG 148
            I     R++      D  +VT TEN ++ A  A+GE+VL NAA EP V +    +V MG
Sbjct: 143 YIYAKAKRLKGARIVTDMITVTGTENLLMAAVLADGETVLENAAREPEVGDLANLLVKMG 202

Query: 149 VQIDGLGTSRVTVRGGQQLGGGEFRFDEDFHEIATFLAMGAITGGQVRVRNSAPEQFPLI 208
            +I+G+GT R+ ++G +QL G       D  E  TFL   A TGG V +R +   +  L+
Sbjct: 203 AKIEGIGTDRLVIQGVEQLHGASHEVIADRIETGTFLCAVAATGGDVTLRRT---RAGLL 259

Query: 209 DRTFAKF---GVEVVHENGWSHTRQNGPLKVVKPFTSNILTKVEAAPWPYLPVDLLPIFI 265
           D    K    G  +     W   +     K V   T+          +P  P D+   F+
Sbjct: 260 DAALDKLRDAGAILTSGEDWIRIQMARRPKAVSFRTTE---------YPGFPTDMQAQFM 310

Query: 266 ALGVKAEGNTMFWNKIYDGAMGWSSELSKFGAHVFLGDPHRLIT----FGGLPLSPASVE 321
           AL   A+G +     I++       EL++ G  + +     ++T    F G P+      
Sbjct: 311 ALNCIADGTSHVTETIFENRFMHVQELNRLGTAIDVEGNTAIVTGVEKFIGAPVMATD-- 368

Query: 322 SPYIIRVAIALFMVAASIEGRSEIRNALPIRRAHPKFVENLRSLGAVVDWVE 373
               +R + +L +   + +G + +     + R + +    L ++GA +  ++
Sbjct: 369 ----LRASASLVIAGLAAQGETVVERIYHLDRGYDRMEAKLSAIGADIQRIK 416


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,245,063
Number of extensions: 53812
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,207,925
Effective search space: 347882400
Effective search space used: 347882400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)