BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0034.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313786|ref|YP_003777878.1| outer membrane protein [Herbasp...   486   e-138

>gi|300313786|ref|YP_003777878.1| outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 373

 Score =  486 bits (1251), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 321/370 (86%), Positives = 338/370 (91%), Gaps = 7/370 (1%)

Query: 1   MTTSTIHPLPPASVEAVNNNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSG 60
           MTTSTIH LPPASVEAVNNNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSG
Sbjct: 1   MTTSTIHSLPPASVEAVNNNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSG 60

Query: 61  EGVSAKAIGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAV 120
           EGVSAK IGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAV
Sbjct: 61  EGVSAKTIGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAV 120

Query: 121 ASLATAALLGSAVGSVISGGAKTLGAAGGVLGTGAAATAAAMGPEGAQQAGNLADRASGY 180
           ASLATAALLGSAVGSVISGGAKT+GAAGG LGTGAAATAAA+G EGAQQAGNLADRASGY
Sbjct: 121 ASLATAALLGSAVGSVISGGAKTVGAAGGALGTGAAATAAAVGSEGAQQAGNLADRASGY 180

Query: 181 FIDSMFRSGTANGTANTSAA-------PAAPVTPAAGSDAANAAPAAPLAAPTPADGREL 233
           FID+MFR+ TA G+ +T+++         A  + AA   AA +APAAPLAA TPADGREL
Sbjct: 181 FIDAMFRTPTAGGSNSTNSSAAPAAPVTPAAGSDAATGAAAASAPAAPLAASTPADGREL 240

Query: 234 TSAQRMEVVRVFGYSLANQQLADNDKRYLGQLVARHTGLSQADAEKRVADTFAAYQRNLD 293
           +SAQRMEV RVF YSLANQQLAD DKRYLGQLVARHTG+SQADAEKRV DTFAAYQRNL+
Sbjct: 241 SSAQRMEVARVFAYSLANQQLADGDKRYLGQLVARHTGMSQADAEKRVGDTFAAYQRNLE 300

Query: 294 QAATKAKEAADAARKAAAYASLWMFLALLCGAFVASLLATYGGRLRDRNELYGEPVLRHE 353
           QAATKAKEAADAARKAAAYASLWMFLALLCGAF+ASLLATYGGRLRDRNELY EPVLRHE
Sbjct: 301 QAATKAKEAADAARKAAAYASLWMFLALLCGAFIASLLATYGGRLRDRNELYAEPVLRHE 360

Query: 354 LRDHRVGEPE 363
           + +HR G PE
Sbjct: 361 VHEHRAGGPE 370


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.129    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 743,325
Number of extensions: 22478
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)