BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0026.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313798|ref|YP_003777890.1| low temperature-induced protein...   263   1e-71
gi|300309772|ref|YP_003773864.1| DNA-binding ferritin-like prote...    71   8e-14

>gi|300313798|ref|YP_003777890.1| low temperature-induced protein
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  263 bits (671), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 123/138 (89%), Positives = 132/138 (95%)

Query: 16  LAPLATPGVLSAQASQEIGGALTMLLADIFALYLKTKNFHWHMSGPHFRDYHLLLDDQSQ 75
           +APLATPGVLS QA QE+GGALTMLLAD+FALYLKTKNFHWHMSGPHFRDYHLLLDDQSQ
Sbjct: 1   MAPLATPGVLSEQARQEVGGALTMLLADVFALYLKTKNFHWHMSGPHFRDYHLLLDDQSQ 60

Query: 76  QILAITDAVAERVRKIGATTLRSTGQVGKLQRLADNDADFVTPSDMLAELREDNLRLVGF 135
           QI+AITDAVAERVRKIG TTLRSTG +GKLQRL+DNDADFVTP+DMLAELREDNLRLVGF
Sbjct: 61  QIIAITDAVAERVRKIGGTTLRSTGHIGKLQRLSDNDADFVTPADMLAELREDNLRLVGF 120

Query: 136 MMATHELCDEHGDVAPPA 153
           MMATHELCD+HGDVA  +
Sbjct: 121 MMATHELCDQHGDVATAS 138


>gi|300309772|ref|YP_003773864.1| DNA-binding ferritin-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score = 70.9 bits (172), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 2/114 (1%)

Query: 12  EKRRLAPLATPGVLSAQASQEIGGALTMLLADIFALYLKTKNFHWHMSGPHFRDYHLLLD 71
           +K   AP    G+ + +  ++I   L+ LLAD + LYLKT NFHW+++GP F   HL+ +
Sbjct: 3   KKNVAAPSINIGI-NDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMFE 61

Query: 72  DQSQQILAITDAVAERVRKIGATTLRSTGQVGKLQRLADNDADFVTPSDMLAEL 125
            Q  ++    D +AER+R +G     S  +  KL  + + D       +M+A+L
Sbjct: 62  GQYNELALAVDLIAERIRALGYPAPGSYKEFAKLSSIPEADG-VPNAQEMIAQL 114


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 673,946
Number of extensions: 25109
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)