BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0025.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313799|ref|YP_003777891.1| arylesterase [Herbaspirillum se...   545   e-156
gi|300313276|ref|YP_003777368.1| 3-oxoadipate enol-lactone hydro...    70   2e-13

>gi|300313799|ref|YP_003777891.1| arylesterase [Herbaspirillum
           seropedicae SmR1]
          Length = 275

 Score =  545 bits (1403), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/275 (95%), Positives = 269/275 (97%)

Query: 1   MSTITTRDGTEIYYKDWGSGQPVVFGHGWPLDGDMWEYQMNFLAERGYRVIAYDRRGFGR 60
           MSTITTRDGTEIYYKDWGSGQPVVFGHGWPLDGDMWEYQMNFLAERGYRVIAYDRRGFGR
Sbjct: 1   MSTITTRDGTEIYYKDWGSGQPVVFGHGWPLDGDMWEYQMNFLAERGYRVIAYDRRGFGR 60

Query: 61  SSQPWSGYDYDTFADDLAELMDKLDLQGATLVGFSMGGGDVARYIGRHGSKRVAKAALLG 120
           SSQPWSGYDYDTFADDLAELM+ LDLQGATLVGFSMGGGDVARYIGRHGSKRVAKAALLG
Sbjct: 61  SSQPWSGYDYDTFADDLAELMEHLDLQGATLVGFSMGGGDVARYIGRHGSKRVAKAALLG 120

Query: 121 AVTPIFGQAPDFPQGVPAEVFAGIKEGLLKDRAQFISDFAAVFFGTNRPGKADAVSAGVL 180
           AVTPIFGQAPDFPQGVPAEVFAGIKEGLLKDRAQFISDFAAVFFGTNRPGKADAVS GVL
Sbjct: 121 AVTPIFGQAPDFPQGVPAEVFAGIKEGLLKDRAQFISDFAAVFFGTNRPGKADAVSPGVL 180

Query: 181 SQTFNIAMLASLKGTLDCVSAFSGTDFREDIKKFNFPTLVIHGDDDQVVPFQTTGKLVAE 240
           +QTFNIAMLASLKGTLDCV+AFSGTDFR DIKKFNFPTLVIHGDDDQ+VP Q+TGKLVAE
Sbjct: 181 AQTFNIAMLASLKGTLDCVTAFSGTDFRADIKKFNFPTLVIHGDDDQIVPLQSTGKLVAE 240

Query: 241 MVPGAQLKIYGGAPHALCATHKDQINEDLLAFLKG 275
           MVPGAQLKIY GAPHALCATHKDQ+N DLLAFLKG
Sbjct: 241 MVPGAQLKIYSGAPHALCATHKDQVNADLLAFLKG 275


>gi|300313276|ref|YP_003777368.1| 3-oxoadipate enol-lactone
           hydrolase/4-carboxymuconolactone decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 97/253 (38%), Gaps = 14/253 (5%)

Query: 23  VVFGHGWPLDGDMWEYQMNFLAERGYRVIAYDRRGFGRSSQPWSGYDYDTFADDLAELMD 82
           VV  H    D  MW+   N LA    RVIAYD RG G S +    Y     ADD A L+ 
Sbjct: 77  VVLSHALGTDLMMWDGLANQLAA-DCRVIAYDHRGHGSSEKADGLYSMADLADDAARLLR 135

Query: 83  KLDLQGATLVGFSMGGGDVARYIGRHGSKRVAKAALLGAVTPIFGQAPDFPQGVPAEVFA 142
           +LD      VG SMGG        RH    + +A +L   T  +   PD  +    +  A
Sbjct: 136 ELDSGPVVWVGLSMGGMVGQELALRHPG--LVRALVLANTTSAY---PDAAREAWQQRIA 190

Query: 143 GIKEGLLKDRAQFISDFAAVFFGTNRPGKADAVSAGVLSQTFNIAMLASLKGTLDCVSAF 202
            +       RA+ I   A    G        +  A  +++     +     G + C  A 
Sbjct: 191 TV-------RAEGIEVIADAVMGRYFHEGFRSAQAATVARYRQRLVTTDAVGYVGCCHAV 243

Query: 203 SGTDFREDIKKFNFPTLVIHGDDDQVVPFQTTGKLVAEMVPGAQLKIYGGAPHALCATHK 262
              D    +     PTLVI G+ DQ  P      LV + + GA+L +  GA H       
Sbjct: 244 GTVDTAARLGSIRVPTLVIAGELDQGTPVAMAQALV-DGISGARLAVIAGASHVSAVEQP 302

Query: 263 DQINEDLLAFLKG 275
               E +  F+ G
Sbjct: 303 ALFAELVCGFIDG 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 956,464
Number of extensions: 43391
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 3
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)