BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0023.p
         (595 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313801|ref|YP_003777893.1| metal-dependent hydrolase [Herb...  1140   0.0  

>gi|300313801|ref|YP_003777893.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score = 1140 bits (2949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/569 (95%), Positives = 557/569 (97%)

Query: 27  DLGGRTVIPGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQAARTPHPQWVRVV 86
           DLGGRTVIPGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQAARTPHPQWVRVV
Sbjct: 59  DLGGRTVIPGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQAARTPHPQWVRVV 118

Query: 87  GGWTEFQFAEKRMPTLEELNAAAPDTPVFVLHLYDRALLNRAALQAVGYTKDTPNPPGGE 146
           GGWTEFQFAEKRMPTLEELNAAAPDTPVFVLHLYDRALLNRAALQAVGYTKDTPNPPGGE
Sbjct: 119 GGWTEFQFAEKRMPTLEELNAAAPDTPVFVLHLYDRALLNRAALQAVGYTKDTPNPPGGE 178

Query: 147 IVRDASGNPTGMLIARPNAMILYATLAKGPALPQEYQVNSTRQFMRELNRLGVTSAIDAG 206
           IVRDASGNPTGMLIARPNAMILYATLAKGP LPQEYQVNSTRQFMRELNRLGVTSAIDAG
Sbjct: 179 IVRDASGNPTGMLIARPNAMILYATLAKGPTLPQEYQVNSTRQFMRELNRLGVTSAIDAG 238

Query: 207 GGFQNYPDDYQIINKLAADGQLTIRIAYNLFTQSKGSELADFQKWTGMVKPGDGDDFLRH 266
           GGFQNYPDDYQIINKLAADGQLTIRIAYNLFTQ+KG ELADFQKWTGMVKPGDGDDFLRH
Sbjct: 239 GGFQNYPDDYQIINKLAADGQLTIRIAYNLFTQNKGGELADFQKWTGMVKPGDGDDFLRH 298

Query: 267 NGAGEMLVFSAADFEDFLEPRPDLADGMEEELERVVRHLVSNRWPFRLHATYDESISRML 326
           NGAGEMLVFSAADFEDFLEPRPDLA+GMEEELERVVRHLVSNRWPFRLHATYDESI+RML
Sbjct: 299 NGAGEMLVFSAADFEDFLEPRPDLAEGMEEELERVVRHLVSNRWPFRLHATYDESIARML 358

Query: 327 DVFEKVNRDIPFDGLHWMFDHAETITERNIERVKALGGGIAIQHRMAFQGEYFIDRYGSD 386
           DVFEKVNRDIPFDGLHWMFDHAETITERNIERVKALGGGIAIQHRMAFQGEYFIDRYGS+
Sbjct: 359 DVFEKVNRDIPFDGLHWMFDHAETITERNIERVKALGGGIAIQHRMAFQGEYFIDRYGSE 418

Query: 387 AAEHTPPVAKMLEMGVPVGAGTDATRVASYNPWTALYWLVSGRTVGGTQLYRSTGRLPRE 446
           AAEHTPP+AKMLEMGVPVGAGTDATRVASYNPWTALYWLVSGRTVGG +LY + GRLPRE
Sbjct: 419 AAEHTPPIAKMLEMGVPVGAGTDATRVASYNPWTALYWLVSGRTVGGAKLYGAAGRLPRE 478

Query: 447 TALELWTAGSAWFSSEQAKKGRIQAGQLADLAVLSADFFSVHEDDIKSIESVMTVVDGKV 506
           TALELWTAGSAWFSSEQAKKGRIQAGQLADLAVLSADFFSVHED+IK IES+MTVVDGKV
Sbjct: 479 TALELWTAGSAWFSSEQAKKGRIQAGQLADLAVLSADFFSVHEDEIKGIESLMTVVDGKV 538

Query: 507 VYGTGPFSAHGQGEIPVLPDWSPVAKVPGHYRAVASSDAARQKKTALPHACAGSCGVHGH 566
           VYG GPFS+HG GEIPVLP+WSPVAKVPGHYRAVA +DAARQKK  LPHAC GSCGVHGH
Sbjct: 539 VYGAGPFSSHGPGEIPVLPEWSPVAKVPGHYRAVAKTDAARQKKATLPHACVGSCGVHGH 598

Query: 567 AHDVARKSTVPVSHFAGFWGALGCSCFAF 595
           AHDVARKS+VPVS+FAGFWGALGCSCFAF
Sbjct: 599 AHDVARKSSVPVSNFAGFWGALGCSCFAF 627


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,015,341
Number of extensions: 89971
Number of successful extensions: 245
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 504
Effective length of database: 1,188,985
Effective search space: 599248440
Effective search space used: 599248440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)