BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0008.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313812|ref|YP_003777904.1| hypothetical protein Hsero_4530...   167   7e-43

>gi|300313812|ref|YP_003777904.1| hypothetical protein Hsero_4530
           [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  167 bits (422), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/199 (51%), Positives = 132/199 (66%), Gaps = 7/199 (3%)

Query: 1   MDRSVVFTPREPVLPGGIFLNCLCLLAISGYLGLLLYLQSMALLPGTPLRQLQYTGIILT 60
           M+RS+VFTPREPV+PGG+ LN LCLLA+S  L  LLY +    +P   L  LQ TGIILT
Sbjct: 1   MNRSIVFTPREPVMPGGLVLNGLCLLAVSNCLVALLYTEWYLRVPPCELCMLQRTGIILT 60

Query: 61  GIGFLRNLRFGIKSAHYGVALVGALLTGLMALRQISLEALAGQTPTGPLLQGMHFHTWMA 120
           G+GF++NL  G+KSAHYGVAL+GALLTGL+ALRQ+ ++ +A        L       + A
Sbjct: 61  GMGFMKNLCQGVKSAHYGVALLGALLTGLIALRQLWMQPVAAMLSQPVCL-------FAA 113

Query: 121 LFSLAAMLTIAALLGVKSAEYPATLLLLQSAEKENEPRRIPWGRIGAGTIFVLLAGAHLV 180
           LF+L A++ IA LLGVKSAEYP TLLLLQ+AE  +E   +PWGRI    +F+      L 
Sbjct: 114 LFALVAIIVIACLLGVKSAEYPGTLLLLQTAEATDEKHGVPWGRILVCAVFIATVAVTLS 173

Query: 181 ASMGGCGRLVCGEGLIDLL 199
            SM  C    CG  +++ L
Sbjct: 174 GSMINCTSATCGASVLERL 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.143    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 575,407
Number of extensions: 19666
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)