BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0001.p (224 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313818|ref|YP_003777910.1| two component transcription reg... 419 e-119 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 214 4e-57 gi|300309981|ref|YP_003774073.1| two component response regulato... 204 3e-54 gi|300314013|ref|YP_003778105.1| two component response regulato... 180 8e-47 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 178 4e-46 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 419 bits (1078), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/223 (91%), Positives = 217/223 (97%) Query: 1 MRILLVEDHIELSRWLSKALRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILLVEDHIELSRWL+KA+RDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDG+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNLGADDYLAKPFELEELEARVKALLRRSQ 120 EVLKRMRARG+RTPVLILTARGGLADRVSGLN+GADDYLAKPFELEELEARVKALLRRSQ Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 SQEAVTVACGALCFDTVSRTFTYHGELLALTPREHAVLEVLIMRQGHTVPKDKLFQQVFS 180 + EAVTV+CGAL FDTVSRTFTY GELLALTPREHAVLE LI+R GHTVPK+KLFQQVF+ Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHEGAGRVGITTLRGLGYLLQA 223 L+DNAS+DAIEIYIHRLRKKLEHEG GRVGITTLRGLGYLLQA Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 214 bits (546), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 111/222 (50%), Positives = 150/222 (67%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLSKALRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 M++LL+ED+ +L+ WL + L++ V+ A +G AD +L ++Y +V+LDL LP++ G Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNLGADDYLAKPFELEELEARVKALLRRSQ 120 VL+R+R R + PV+ILTA G + ++V L GADDYL KPFE+ EL AR+K L+RR Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 121 SQEAVTVACGALCFDTVSRTFTYHGELLALTPREHAVLEVLIMRQGHTVPKDKLFQQVFS 180 +A + CG L +D+ +R F G LAL REH VLEVLI+RQG TV K L + VFS Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHEGAGRVGITTLRGLGYLLQ 222 L + S DAIE+YI RLRKKL+ GA I TLRGLGYLL+ Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGA---AIMTLRGLGYLLR 219 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 204 bits (520), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 112/222 (50%), Positives = 145/222 (65%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLSKALRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILL ED L+ L+++LR + +C NG +ADS L TQD+ L+ILDL LP+M GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNLGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+R+RAR SR PVLILTA + RV GL+LGADDY+AKPF L ELEARV+AL RR Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 SQEAVTVACGALCFDTVSRTFTYHGELLALTPREHAVLEVLIMRQGHTVPKDKLFQQVFS 180 + G L +D V R ++L L+ RE +LEVL+ R G V K++L + Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHEGAGRVGITTLRGLGYLLQ 222 + S +AIE+Y+HRLRKK+E G V I T+RGLGY L+ Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIE---VGGVRIATVRGLGYCLE 219 >gi|300314013|ref|YP_003778105.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 180 bits (456), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 110/222 (49%), Positives = 149/222 (67%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLSKALRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 M ILLVED I++SR L +AL V +G A S + LV+LDL +P +DGL Sbjct: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNLGADDYLAKPFELEELEARVKALLRRSQ 120 +L+R+R++ TPV++LTARG + DRV GLN GADDYLAKPF+L+EL+AR++ALLRR Sbjct: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 Query: 121 SQEAVTVACGALCFDTVSRTFTYHGELLALTPREHAVLEVLIMRQGHTVPKDKLFQQVFS 180 + + CG L FD S F + L LTPREH +L+ LI + GH V K+KLF+ VF Sbjct: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHEGAGRVGITTLRGLGYLLQ 222 ++++ ++AIE+ +HR+RKKL GA I TLRGLGYLL+ Sbjct: 181 MEESTQLEAIEVVVHRVRKKLMETGA---EIMTLRGLGYLLR 219 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 178 bits (451), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 101/221 (45%), Positives = 139/221 (62%), Gaps = 4/221 (1%) Query: 1 MRILLVEDHIELSRWLSKALRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILLVED +++ + L TVE NGA A S L++ Y L+ILD+ LP+ DG Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHA-SRRLSESYDLLILDVMLPQQDGF 59 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNLGADDYLAKPFELEELEARVKALLRRSQ 120 +L+++R RG TPVL+LTA + +RV L+LGADDYL KPF+ EL+AR++ LLRRS Sbjct: 60 SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 Query: 121 SQEAVTVACGALCFDTVSRTFTYHGELLALTPREHAVLEVLIMRQGHTVPKDKLFQQVFS 180 + + C L D SR+ T G+ + LT RE +LE++ R G KD+L ++F+ Sbjct: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 Query: 181 LDDNASVDAIEIYIHRLRKKLEHEGAGRVGITTLRGLGYLL 221 +DDN S +++E Y+ RLRKKL A I TLRGLGY L Sbjct: 180 VDDNPSANSVEQYVARLRKKL---AAAAFEIRTLRGLGYQL 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 675,510 Number of extensions: 26500 Number of successful extensions: 232 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 47 Length of query: 224 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 142 Effective length of database: 1,231,600 Effective search space: 174887200 Effective search space used: 174887200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)