BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0043.p
         (120 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance ...   206   6e-55
gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb...    69   7e-14
gi|300313244|ref|YP_003777336.1| multidrug efflux system transme...    63   8e-12
gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr...    60   4e-11
gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr...    58   2e-10

>gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance
           cation efflux system transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1073

 Score =  206 bits (523), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 105/112 (93%), Positives = 110/112 (98%)

Query: 1   MLIGENSRKVSQAVDKKMQEINRTLPQGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVV 60
           MLIGENSRKVSQAV +KM+EINR+LP+GVEAVTVYDRTVLVDKAIATVKKNLVEGALLVV
Sbjct: 296 MLIGENSRKVSQAVARKMEEINRSLPKGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVV 355

Query: 61  AVLFLFLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII 112
           AVLF+FLGNIRAAIITA VIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII
Sbjct: 356 AVLFVFLGNIRAAIITAMVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII 407


>gi|300309819|ref|YP_003773911.1| acriflavin resistance
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1048

 Score = 69.3 bits (168), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 4/107 (3%)

Query: 6   NSRKVSQAVDKKMQEINRTLPQGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFL 65
           N+   + AV KKM+E+ +  P GV+    YD +  V  +I  V K L+E  +LV  V+FL
Sbjct: 298 NALGTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFL 357

Query: 66  FLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII 112
           FL NIR  II   V+P+A+L TF  ++    S N+L++    FG+++
Sbjct: 358 FLQNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTM----FGMVL 400


>gi|300313244|ref|YP_003777336.1| multidrug efflux system
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1033

 Score = 62.8 bits (151), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 4/109 (3%)

Query: 4   GENSRKVSQAVDKKMQEINRTLPQGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVL 63
           G N+ + + A+  +M+E+  +LPQG+     Y+    V  +I  V + L+E  +LV  V+
Sbjct: 296 GANAVRTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVM 355

Query: 64  FLFLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII 112
           +LFL N+R  +I A V P+A+L T   M     S N+L++    FG+++
Sbjct: 356 YLFLQNVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTM----FGMVL 400


>gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1049

 Score = 60.5 bits (145), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%)

Query: 4   GENSRKVSQAVDKKMQEINRTLPQGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVL 63
           G N+    +A+DK++ E+ +  P G++    YD T  V  +I  V + L+E  +LV  V+
Sbjct: 296 GANALDTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVM 355

Query: 64  FLFLGNIRAAIITATVIPLAMLFTF 88
           +LFL N RA +I    +P+ +L TF
Sbjct: 356 YLFLQNFRATLIPTIAVPVVLLGTF 380


>gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1051

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 6/111 (5%)

Query: 4   GENSRKVSQAVDKKMQEINRTLPQGVEAVT--VYDRTVLVDKAIATVKKNLVEGALLVVA 61
           G N+   + AV KK+ E+    P  ++  T   YD T  V  ++  V K L+E  +LVV 
Sbjct: 296 GANALATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVL 355

Query: 62  VLFLFLGNIRAAIITATVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIII 112
           +++LFL NIRA  I A  +P+ +L TF  +     S N L++    FG+++
Sbjct: 356 IMYLFLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTM----FGMVL 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 248,650
Number of extensions: 6001
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 9
Length of query: 120
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,269,480
Effective search space: 58396080
Effective search space used: 58396080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)