BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0039.p (453 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311800|ref|YP_003775892.1| two component heavy metal senso... 104 1e-23 gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 100 3e-22 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 99 1e-21 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 97 3e-21 gi|300309362|ref|YP_003773454.1| transmembrane sensory transduct... 87 3e-18 >gi|300311800|ref|YP_003775892.1| two component heavy metal sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/273 (30%), Positives = 133/273 (48%), Gaps = 13/273 (4%) Query: 167 ILLGIIGGIAIRRSLLAKVKDIDQAASAIVRGDFTHRLPHHGGESELASLVKTANLMLDQ 226 I+L +I I R+ LA ++ + A + + R+P EL+ L N LD+ Sbjct: 178 IVLAVISSYWIARAGLAPLRQMSDRAQSFSPRKLSARMPVEAMPQELSVLALAFNGALDR 237 Query: 227 IEQLMKGVINASNSIAHDLRTPLAELRSRLE-DLARQEMNSE---EVEGAIEDVDRVISI 282 IE + + +AH+LRTPLA L + LAR+ E ++ +E++DR+ SI Sbjct: 238 IEDAYTQLEAFNADVAHELRTPLANLIGETQVALARERSAGEFKDVLQSNLEELDRIRSI 297 Query: 283 FNALLRLVEIDTGARRAGFSDMNAAAVVADVCEFYRPLAESTGKIIDHRPSGPLVLKGDA 342 N +L L D G A V +F+ + + +G I+ + Sbjct: 298 VNDMLFLARSDQGEAATARVPARVADEVQKTVDFFEFVLDDSGMRIEVAGDTEATAMMET 357 Query: 343 LLLAQAVANLIDNALKFIPIGG--KVTLSCVQLDDGRVLVRVSDNGPGISDAELPKVQQR 400 L +A+ NLI NA++ P G ++ ++C + V V VS+ G I + LP++ R Sbjct: 358 ALFKRALTNLIQNAIQHSPEGALLRIDIAC---QEETVRVAVSNPGKPIDEHHLPRLFDR 414 Query: 401 FYRGDTSRS----TPGVGLGLSLVASVARLHGG 429 FYR D++R + G GLGL++V +VAR+HGG Sbjct: 415 FYRVDSARQDINGSHGHGLGLAIVKAVARMHGG 447 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 144/299 (48%), Gaps = 23/299 (7%) Query: 169 LGIIGGIAIRRSLLAKVKDIDQAASAIVRGDFTHRLP--HHGGESELASLVKTANLMLDQ 226 +G++ +A+ R L + +AA+ + D P G E+ L N +L + Sbjct: 153 IGVLSWVAVSRGL----APVRKAAAEVAARDMNSLQPLADVGMPQEIQPLTHALNDLLAR 208 Query: 227 IEQLMKGVINASNSIAHDLRTPLAELRSRLEDLARQEMNSEEVEGAIEDV----DRVISI 282 ++ + AH+LRTPL LR + + LA + ++ EE A D+ +R + Sbjct: 209 LKHATETQRAFVADAAHELRTPLTALRLQTQ-LAERAVDEEERRAAFADLKNGLERTTHL 267 Query: 283 FNALLRLVEIDTGARRAGFSDMNAAAVVADVCEFYRPLAESTG---KIIDHRPSG-PLVL 338 + LL L + A F+ ++ A++ V +AE G + D G PL + Sbjct: 268 VHQLLTLARQEPDA--MSFTQVDLRALLGSVVGDLSSVAEHGGIDLGLSDQGDDGRPLRV 325 Query: 339 KGDALLLAQAVANLIDNALKFIPIGGKVTLSCVQLDDGRVLVRVSDNGPGISDAELPKVQ 398 G+A L NL+DNAL++ P GG V + G V V D+GPGI+++ELP+V Sbjct: 326 TGNADALRILFNNLVDNALRYTPAGGVVDVGVDLSTAGYCTVVVQDSGPGIAESELPRVF 385 Query: 399 QRFYR------GDTSRSTPGVGLGLSLVASVARLHGGSLELSHNHPGLRAVLILRTASA 451 RFYR G SR+ G GLGL++V +A LH +EL + GL+A ++ + A Sbjct: 386 DRFYRAQHSQEGSGSRAAFGSGLGLAIVRQIADLHRVPVELRNTGHGLQARVVFPLSPA 444 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 92/347 (26%), Positives = 159/347 (45%), Gaps = 33/347 (9%) Query: 118 DINGNNTRILARHL-ILNGRFHLLVAHDINR-----YRLLENMFI--GGLAASGSIIILL 169 ++ G RI A + + NG + VA I + Y +L + + G L + ++L+ Sbjct: 121 EMRGEPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLV 180 Query: 170 GIIGGIAIRRSLLAKVKDIDQAASAIVRGDFTHRLPHHGGESELASLVKTANLMLDQIEQ 229 + G+ +SL ++ D + G G EL L+ N ++ +I + Sbjct: 181 AVRRGLRPLKSLQRNLEQRDHGKLGAIDG--------RGAPVELQPLIVAMNELMARINK 232 Query: 230 LMKGVINASNSIAHDLRTPLAELRSRLEDLARQEMNSEEVEGAI----EDVDRVISIFNA 285 + N +AH LRTPL L+ +LE L + + + ++ V+R+I Sbjct: 233 GEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQ 292 Query: 286 LLRLVEIDTGARRA-GFSDMNAAAVVADVCEFYRPLAESTGKIIDH----RPSGPLVLKG 340 LL L + G + +++ +V + + + + E+ K ID RP+ L+G Sbjct: 293 LLALARSEPGLFESRKLEELSLDKLVEESVQHF--IEEADKKRIDLGFDLRPAR---LRG 347 Query: 341 DALLLAQAVANLIDNALKFIPIGGKVTLSCVQLDDGRVLVRVSDNGPGISDAELPKVQQR 400 D LL+ + NLIDNA+++ P G VT+ C++ D VL V D+GPGI+ + R Sbjct: 348 DRFLLSDLIDNLIDNAVRYSPPHGTVTVRCLEEQDATVL-SVEDSGPGIAPEHRELIFDR 406 Query: 401 FYRGDTSRSTPGVGLGLSLVASVARLHGGSLELSHNHPGLRAVLILR 447 FYR + G GLGL++V +A HGG + + G + +R Sbjct: 407 FYRAND--KVAGSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVR 451 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 140/289 (48%), Gaps = 22/289 (7%) Query: 162 SGSIIILLGIIGGIAIR---RSLLAKVKDIDQAASAIVRGDFTHRLPHHGGESELASLVK 218 G+++ + ++ A+R R L+ +++ A + G F L H E+ LV+ Sbjct: 179 QGTLVTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSG-FDTALVH----KEMRPLVQ 233 Query: 219 TANLMLDQIEQLMKGVINASNSIAHDLRTPLAELRSR----LEDLARQEMNSEE----VE 270 N + +++ L+ +H LRTPL L+++ L +L R+++++ E VE Sbjct: 234 AMNGYMGRLQALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVE 293 Query: 271 GAIEDVDRVISIFNALLRLVEIDTGARRAGFSDMNAAAVVADVCEFYRPLAESTGKIIDH 330 G D + + N LL L + GA G ++ + V A S + Sbjct: 294 GMARTTDAAVHLANRLLTLARAEHGAAEGGTMPLSLSDAARQVALELSQQAVSREIGLAF 353 Query: 331 RPSGPLVLKGDALLLAQAVANLIDNALKFIPIGGKVTLSC-VQLDDGR---VLVRVSDNG 386 G + ++ +ALLL + + NL+DNA+++ P GG VTL Q G+ L+ V D+G Sbjct: 354 EEEGDVSIEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSG 413 Query: 387 PGISDAELPKVQQRFYR-GDTSRSTP-GVGLGLSLVASVARLHGGSLEL 433 PGI AE KV + FYR G T P G GLGLS+V +A +H S+ L Sbjct: 414 PGIPAAEREKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTL 462 >gi|300309362|ref|YP_003773454.1| transmembrane sensory transduction histidine kinase for cobalt/zinc/ cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 141/287 (49%), Gaps = 12/287 (4%) Query: 168 LLGIIGGIAIRRSLLAKVKDIDQAASAIVRGDFTHRLPHHGGESELASLVKTANLMLDQI 227 LL I+ + RS L ++ + A+ RL EL +V++ N MLD++ Sbjct: 179 LLAILMSYFLVRSGLRPLRTMAAQTRAVSANRLDTRLDLQAAPRELHEIVESFNEMLDRL 238 Query: 228 EQLMKGVINASNSIAHDLRTPLAELRSRLEDLARQEMNSEEVEGA----IEDVDRVISIF 283 + + + S +AHD+RTPL L + + + +E + IE+ +R+ + Sbjct: 239 HRSFQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYERLSRMM 298 Query: 284 NALLRLVEIDTGARRAGFSDMNAAAVVADVCEFYRPLA-ESTGKIIDHRPSGPLVLKGDA 342 ++L L + + +++ A + + +++ +A E+ +++ G L+ DA Sbjct: 299 ESMLFLARAENAHVVLQWQELDVAQELTRIADYFEGIADEAQVRLV---VQGAGRLQADA 355 Query: 343 LLLAQAVANLIDNALKFIPIGGKVTLSCVQLDDGRVLVRVSDNGPGISDAELPKVQQRFY 402 LL +AV NL+ NA+++ P G + L DG + + VS+ G GI +L ++ RFY Sbjct: 356 TLLRRAVGNLVANAIRYTPADGVIRLQVDAAGDG-MEISVSNPGAGIPAEQLERLFDRFY 414 Query: 403 RGDTSR--STPGVGLGLSLVASVARLHGGSLELSHNHPGLRAVLILR 447 R D SR + GLGL++V S+ LHGG ++ + PG V LR Sbjct: 415 RADPSRSSAGGSSGLGLAIVRSIMMLHGGQASVT-SSPGQLTVFSLR 460 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,262,274 Number of extensions: 50761 Number of successful extensions: 350 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 35 Length of query: 453 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 365 Effective length of database: 1,203,190 Effective search space: 439164350 Effective search space used: 439164350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)