BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0037.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 486 e-139 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 216 2e-57 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 188 3e-49 gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 188 4e-49 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 182 2e-47 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 486 bits (1251), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/261 (91%), Positives = 254/261 (97%) Query: 1 MLKVENASVFFAGRDKQVVHALDRVSLEIPERGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 MLKVENASV+F+GRDKQ VHALDRVSL+IP GFVVALGTSGCGKSTLLNAMAGFLPLSE Sbjct: 1 MLKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 Query: 61 GSITLDGKPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFSGVPRNESRDRAQELLRL 120 G I+LDG+PVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKF+GV +++SR+RAQELLRL Sbjct: 61 GRISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRL 120 Query: 121 VGLQDFAKAAPYELSGGMRQRVGLARALAPDPKILLMDEPFGALDSMTREQMQELLVSVW 180 VGLQDFA+AAPYELSGGMRQRVGLARALAP+PKILLMDEPFGALDSMTREQMQELLVSVW Sbjct: 121 VGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVW 180 Query: 181 ARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAEGDARAIKTEPA 240 ARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAA +ARAIKTEPA Sbjct: 181 ARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAGCEARAIKTEPA 240 Query: 241 FAQLREEIRAIVHQSEDLVTS 261 FA+LREEIRAIVHQSEDLVTS Sbjct: 241 FAELREEIRAIVHQSEDLVTS 261 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 216 bits (549), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 117/256 (45%), Positives = 161/256 (62%), Gaps = 4/256 (1%) Query: 2 LKVENASVFFAGRDKQVVHALDRVSLEIPERGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 ++++ F D++VV AL ++L+IP+ FV LG SGCGKSTLLNA+AGF S G Sbjct: 10 IRIQGVHKVFKTDDREVV-ALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSG 68 Query: 62 SITLDGKPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFSGVPRNESRDRAQELLRLV 121 I D K VS PG +RG+VFQ+ +L PW +V+ NVA GL+ G P+ E R +LL + Sbjct: 69 QILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKL 128 Query: 122 GLQDFAKAAPYELSGGMRQRVGLARALAPDPKILLMDEPFGALDSMTREQMQELLVSVWA 181 GL DF P +LSGGMRQRV +AR LA D I+LMDEPFGALD++TR +Q+ L+ +W Sbjct: 129 GLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWD 188 Query: 182 RTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVR-RFAAEGDARAIKTEPA 240 K + F+THSIEEA++L ++VM+ RPG + + R R A+ + A+K E Sbjct: 189 EFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEFNALKRE-- 246 Query: 241 FAQLREEIRAIVHQSE 256 QL E + H +E Sbjct: 247 LGQLVMEEQQRHHNAE 262 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 188 bits (478), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 144/244 (59%), Gaps = 6/244 (2%) Query: 16 KQVVHALDRVSLEIPERGFVVALGTSGCGKSTLLNAMAGFLPLSEGSITLDGKPVSGPGA 75 K V HAL ++L + + FV +G SGCGKSTLLN +AG L SEG + + + GP Sbjct: 24 KGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPAP 83 Query: 76 ERGVVFQKDSLLPWKSVQDNVALGL-KFSGVPRNES--RDRAQELLRLVGLQDFAKAAPY 132 ER VVFQ SLLPW S +N+ LG+ + G N + RDR + L LVGL P Sbjct: 84 ERAVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPN 143 Query: 133 ELSGGMRQRVGLARALAPDPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITH 192 E+SGGM+QRVG+ARALA +PK+LLMDEPFGALD++TR +Q+ L+ + A+T V +TH Sbjct: 144 EISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTH 203 Query: 193 SIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAEGDARAIKTEPAFAQLREEIRAIV 252 ++EA+ L +++M+ P + + A D + +P + Q R + + Sbjct: 204 DVDEAVLLSDRIVMMTNGPAATIGEV---LEVKLARPRDRVVLAQDPEYGQYRTAVLEFL 260 Query: 253 HQSE 256 ++ + Sbjct: 261 YRKQ 264 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 188 bits (478), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 103/222 (46%), Positives = 144/222 (64%), Gaps = 3/222 (1%) Query: 1 MLKVENASVFFAGRDKQVVHALDRVSLEIPERGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 +L+V+ S+ + VV A VS ++ V LG SGCGKS+LL ++AGFLP + Sbjct: 20 LLQVDRVSLQYRSA-TAVVQATHEVSFDVYPADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 Query: 61 GSITLDGKPVSGPGAERGVVFQK-DSLLPWKSVQDNVALGLKFS-GVPRNESRDRAQELL 118 G I LDG+ + PG +R VVFQ+ D L PWK+V NV L S + + ++ +RA+ L Sbjct: 79 GEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKRDAAERARHYL 138 Query: 119 RLVGLQDFAKAAPYELSGGMRQRVGLARALAPDPKILLMDEPFGALDSMTREQMQELLVS 178 VGL FA A P+ LSGGM+ RV +ARALA PK+LLMDEPF ALD++TR +MQE L++ Sbjct: 139 DKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 Query: 179 VWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFET 220 +W + F+THSIEEAL +G ++++SP PGR+ A + Sbjct: 199 LWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINS 240 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 182 bits (462), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 96/224 (42%), Positives = 144/224 (64%), Gaps = 7/224 (3%) Query: 1 MLKVENASVFFAGRDKQVVHALDRVSLEIPERGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 +L+++ ++ + D +V A VS + + LG SGCGKSTLL A+ G+L + Sbjct: 17 LLEIDRVTLQYKTTDS-LVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTS 75 Query: 61 GSITLDGKPVSGPGAERGVVFQK-DSLLPWKSVQDNVALGLKFSGVPRNESR---DRAQE 116 G+I L G+ V PG +R +VFQ+ D LLPWK+V+ NV L SG R + R +RA+ Sbjct: 76 GAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASG--RLQGRAAAERAEY 133 Query: 117 LLRLVGLQDFAKAAPYELSGGMRQRVGLARALAPDPKILLMDEPFGALDSMTREQMQELL 176 + VGL F + P+ LSGGM+QRV +AR +A +P +LLMDEPF ALD++TR +MQ+ L Sbjct: 134 YISKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDEL 193 Query: 177 VSVWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFET 220 + +W T V F+THSIEEA+ +GT +++++P PG++ A + Sbjct: 194 LRLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNS 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 819,007 Number of extensions: 35411 Number of successful extensions: 532 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 387 Number of HSP's successfully gapped: 137 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)