BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0036.p (351 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311646|ref|YP_003775738.1| taurine ABC transporter peripla... 613 e-177 gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate A... 90 3e-19 gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 80 3e-16 gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A... 69 7e-13 gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte... 68 1e-12 >gi|300311646|ref|YP_003775738.1| taurine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 613 bits (1581), Expect = e-177, Method: Compositional matrix adjust. Identities = 322/336 (95%), Positives = 328/336 (97%), Gaps = 1/336 (0%) Query: 16 MNITRRAFNTAIAALLLTGATAAGAADKPIVVGYQSDALPSSLAIANGEFEKATGKKIDF 75 MNITRR FNTAIAALLL GA A AADKPIVVGYQSDALPSSLAIANGEFEKATGKKIDF Sbjct: 1 MNITRRVFNTAIAALLLAGAGAN-AADKPIVVGYQSDALPSSLAIANGEFEKATGKKIDF 59 Query: 76 RKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDEALVVRNGSG 135 RKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDEALVVRNG+G Sbjct: 60 RKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDEALVVRNGAG 119 Query: 136 INSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQPEIVAAYNRGDIDGG 195 INSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQP+IVAAYNRGDIDGG Sbjct: 120 INSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQPDIVAAYNRGDIDGG 179 Query: 196 FVWDPALTELKKNGKVLVTSKDVADKGAPTFSAWIATGSFAKEQPEFLKTFSAVIDKASL 255 FVWDPALTELKKNGKVLVTSKDVADKGAPTFSAWIATGSFAKE PEFLKTFSAVIDKASL Sbjct: 180 FVWDPALTELKKNGKVLVTSKDVADKGAPTFSAWIATGSFAKEHPEFLKTFSAVIDKASL 239 Query: 256 SFQNDKAAWNKDSENARLLAKLLGGTPADQASGLQNLNLVPVSAQASPAWLGGGENSGLA 315 SFQNDKAAWNKDSENARLLAKLLGGTPADQA+GLQNLNLVPV+AQASP WLGGGENSG+A Sbjct: 240 SFQNDKAAWNKDSENARLLAKLLGGTPADQAAGLQNLNLVPVAAQASPTWLGGGENSGIA 299 Query: 316 KILKETAVFLKEQKKISDVLPSYAAFVTPTAVTGLK 351 +ILKETAVFLKEQKKISDVLPSYAAFVTPTAV GLK Sbjct: 300 RILKETAVFLKEQKKISDVLPSYAAFVTPTAVAGLK 335 >gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%) Query: 14 QTMNITRRAFNTAIAALLLTGATAAGAA----DKPIVVGYQSDALPSSLAIANGEFEK-- 67 + + TRR A AL L A A + +K I +GYQ + ++ ANG EK Sbjct: 4 HSTDSTRRRLLHAATALGLGSALAPASVFAQGNKAIRIGYQKSSTLLTILKANGTLEKLL 63 Query: 68 -ATGKKIDFRKFNSGADVIAA--IAGGDVQVGYVGSSPLAAAASRGLDVKAFYLA--SIS 122 TG KI + +F SG ++ A + G D+ + P+ A A+ K Y+A S S Sbjct: 64 APTGAKISWHEFASGLPLLEALNVGGVDLSADVADTVPVFAQAA---GAKLAYVAQESPS 120 Query: 123 GTDEALVVRNGSGINSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQPE 182 +A+VVR S + +DLKGKK+A + HY L+A ++ G DV + + Sbjct: 121 PAAQAIVVRADSVLRKASDLKGKKIAVTKAAGVHYLLIATLEKAGLKFSDVDAAYLSPAD 180 Query: 183 IVAAYNRGDIDGGFVWDPALTELKKNGKVLVTS--KDVADKGAPTFSAWIATGSFAKEQP 240 AA+ RG +D WDP L +++ +V + S + VAD ++A+ SFA+ +P Sbjct: 181 GRAAFERGSVDAWVTWDPFLAGVQRQSQVRILSDGRGVADYQ----RYYLASASFAQARP 236 Query: 241 EFLKT 245 E L+ Sbjct: 237 EVLRV 241 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 12/199 (6%) Query: 13 DQTMNITRRAFNTAIAALLLTGATAAGAAD-------KPIVVGYQSDALPSSLAIANGEF 65 ++T++ RR ++A+ L T A A K + +GYQ A L A+G Sbjct: 6 NKTVHQARRRAIQRLSAIALGALTIALGASPVQAQETKLLRIGYQKAANTLVLLKAHGTL 65 Query: 66 EK---ATGKKIDFRKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASIS 122 EK G ++ + +F +G ++ A+ G V GYVG +P A + G D + I Sbjct: 66 EKRLQPLGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADF-VYTAYEIP 124 Query: 123 GTD-EALVVRNGSGINSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQP 181 D E L+V+ S I SVA+LKGKK+A S H+ ++AL+K G D++ + Sbjct: 125 TPDAEGLLVQKNSPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPA 184 Query: 182 EIVAAYNRGDIDGGFVWDP 200 + AA+ RG +D +WDP Sbjct: 185 DARAAFERGAVDAWAIWDP 203 >gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 68.6 bits (166), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 122/266 (45%), Gaps = 27/266 (10%) Query: 31 LLTGATAAG------AADKPIVVGYQSDALPSSLAIANGEFEKA---TGKKIDFRKFNSG 81 L GA A+G AADK + +GYQ + L +G+ E+A G + + +F +G Sbjct: 17 LAAGALASGTPLVRAAADKVLRIGYQKFNTLNILK-GSGKLEQALQPQGWSVKWFEFAAG 75 Query: 82 ADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDEAL--VVRNGSGINSV 139 + A+ + +G+ +P A + G V A YL + + + V S I SV Sbjct: 76 PQLTEALNANAIDLGHAADTPSVFANASG--VNAVYLGAEQPYPKGIGIFVAQESPIRSV 133 Query: 140 ADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVK-VFAIPQPEIVAAYNRGDIDGGFVW 198 ADLKGKK+A + LL ++ G + +D++ V+ ++ AA+ G++D +W Sbjct: 134 ADLKGKKVATGRGWNVQFLLLKALEEVGLSYRDIEPVYVTNAADVRAAFQSGNVDAATLW 193 Query: 199 DPAL--TELKKNGKVLVTSKDVADKGAPTFSAWIATGSFAKEQPEFLKTFSAVIDKASLS 256 DP L EL ++L +++ TF +A SF + ++T A + K + Sbjct: 194 DPFLAGQELATRPRILRDGTGLSNNR--TFH--LAVPSFVDRHKDIVRTVFAELKKTNQW 249 Query: 257 FQNDKAAWNKDSENARLLAKLLGGTP 282 Q+ E A LLA LG P Sbjct: 250 TQSHP------QETAELLAPQLGVDP 269 >gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 11/215 (5%) Query: 35 ATAAGAADKPIVVGYQSDALPSSLAIANGEFEK---ATGKKIDFRKFNSGADVIAAIAGG 91 A AA + + VGYQ AL SL A+G E+ G + + +F++G + A+ G Sbjct: 43 AWVHAAAPRQLRVGYQKGAL--SLIRAHGVLEQRLAPLGATVKWVEFSAGPVQLEALGAG 100 Query: 92 DVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDEALVVRNGSGINSVADLKGKKLAAAP 151 + G VG +P A + G + EA++V++ S + LKGK++A Sbjct: 101 SIDFGDVGEAPPIFAQAAGTPLVYVGATVPRPYVEAVLVKDDSELQRPQQLKGKRIALNK 160 Query: 152 VSTDHYQLLALIKSQGWTEKDVKVFAIPQPEIVAAYNRGDIDGGFVWDPALTELKK--NG 209 S HY L+ L++ G DV + + AA+ RG +D +W+P L ++ Sbjct: 161 GSNVHYFLVKLLEKHGLKYGDVTPVWLAPADARAAFERGAVDAWAIWEPYLAAAQQGLKA 220 Query: 210 KVLVTSKDVADKGAPTFSAWIATGSFAKEQPEFLK 244 ++L + V A FS T +A++ + L+ Sbjct: 221 RILADADGVVKNRAYYFS----TRDYARDHADLLR 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.130 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,042,308 Number of extensions: 42133 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 7 Length of query: 351 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 265 Effective length of database: 1,212,660 Effective search space: 321354900 Effective search space used: 321354900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)