BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0023.p (264 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311887|ref|YP_003775979.1| two component sensor histidine ... 99 4e-22 gi|300313027|ref|YP_003777119.1| two component transmembrane sen... 79 3e-16 gi|300311810|ref|YP_003775902.1| two component sensor histidine ... 77 2e-15 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 70 1e-13 gi|300314018|ref|YP_003778110.1| two component sensor histidine ... 67 2e-12 >gi|300311887|ref|YP_003775979.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 633 Score = 98.6 bits (244), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 131/262 (50%), Gaps = 20/262 (7%) Query: 8 VISHSVI---TERVIANHRLEAQQIELKRS-------NDELLAFAYVASHDLKSPLRGIG 57 +IS +VI ++R A +EA +LKR N EL +F+Y SHDL++PLR I Sbjct: 350 LISRTVIYDISDRKRAEEEIEALNADLKRQALHLHSVNKELESFSYSVSHDLRAPLRAIS 409 Query: 58 QLANWIREDLVARNSTSIEEHLRMMQQRIARMDKLLDDLLLYSRVGRSHLLMDDINAYEL 117 A + ED E L+++++ + +MD+L++DLL ++ L ++ + +L Sbjct: 410 GYAMILEEDYADAIDEKGREQLQVIRRNVRKMDELINDLLKLAKSTTGELTLERFSMDDL 469 Query: 118 VQQIFDAYL---PVSTFKL-HLEGQYFPMRTCQATLEQVLRNLVSNSVKHHDRQHGTITV 173 V+Q+ P F + LEG + + QV NL+SN+VK + Sbjct: 470 VRQVIAGLRRENPNVLFDVPPLEGAV----ANRGLITQVWENLLSNAVKFSSKSEQPAVR 525 Query: 174 VICRSGDDLAEFTVSDDGPGIAPIFHQRVFQMFQTLRPRDEVEGSGMGLALVKKLVESAG 233 V + + + V D+G G + ++F FQ L ++E G+G+GLALV+++V Sbjct: 526 VSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGLALVQRIVIRHT 585 Query: 234 GTIRLRSNAPAERGCTFIFTWP 255 G + +S P E G +F F+ P Sbjct: 586 GRVWAQSK-PGE-GASFYFSLP 605 >gi|300313027|ref|YP_003777119.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 454 Score = 79.3 bits (194), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 106/200 (53%), Gaps = 20/200 (10%) Query: 64 REDLVARNSTSIEEHLRMMQQRIARMDKLLDDLLLYSRVGRSHLLMDDINAYELVQQIFD 123 R DL A S + E L + + R+ ++ L +SR+G S+ M D++ + D Sbjct: 249 RADL-AFLSEDVTELLAESNEGLQRVRNIVQSLKDFSRIGESNWQMTDLH------RGLD 301 Query: 124 AYLPVST----FKLHLEGQY--FPMRTCQAT-LEQVLRNLVSNSVKHHDRQHGTITVVIC 176 + L ++ +K+ + QY P+ C A+ L QV NL+ N+ + + GT+T+ Sbjct: 302 STLNIANNELKYKVSIVKQYGELPLVKCLASELNQVFMNLLVNAAQAIS-ERGTVTICTA 360 Query: 177 RSGDDLAEFTVSDDGPGIAPIFHQRVFQMFQTLRPRDEVEGSGMGLALVKKLVESAGGTI 236 R+GD ++ ++SD G GIAP R+F+ F T +P G+G+GL+L +V+ GG I Sbjct: 361 RAGDKVS-VSISDTGHGIAPENLNRIFEPFFTTKPVG--SGTGLGLSLSYGIVKKHGGDI 417 Query: 237 RLRSNAPAERGCTFIFTWPI 256 R+ S+AP G TF PI Sbjct: 418 RV-SSAPG-CGTTFTIELPI 435 >gi|300311810|ref|YP_003775902.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 535 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 123/272 (45%), Gaps = 44/272 (16%) Query: 23 RLEAQQIELKRSNDELLA-------FAYVASHDLKSPL-------RGIGQ----LANWI- 63 +LE + EL N +LL F Y SHDL+SPL + IG L N + Sbjct: 262 QLERRARELTELNADLLQQTQDNEMFIYSVSHDLRSPLVNLQGFSKEIGHATTDLLNAVQ 321 Query: 64 --------REDLVARNSTSIEEHLRMMQQRIARMDKLLDDLLLYSRVGRSHL--LMDDIN 113 + L + + I+ LR +Q + R ++D +L SR GR +M D+N Sbjct: 322 ALPVPDADKAKLRSVVADDIQPALRFIQNAVTRSAGIIDSMLRLSRAGRVEYQPVMLDMN 381 Query: 114 AYELVQQIFDAYLPVSTFK---LHLEGQYFPMRTCQATLEQVLRNLVSNSVKHHD-RQHG 169 + Q+I A K + + + P +EQVL NLV N+V + D + G Sbjct: 382 V--IAQRIVAAMSGSIRDKGAVVEVAPELPPAFGDPTAIEQVLGNLVGNAVNYLDPARPG 439 Query: 170 TITVVICR------SGDDLAEFTVSDDGPGIAPIFHQRVFQMFQTLRPRDEVEGSGMGLA 223 IT+ R +G + + V D+G GI P + ++F FQ L + G G+GLA Sbjct: 440 RITIDHLREEGGAATGPETNVYVVRDNGLGIPPAYMHKMFIAFQRLH-GNAAPGEGIGLA 498 Query: 224 LVKKLVESAGGTIRLRSNAPAERGCTFIFTWP 255 LVK++VE GG I + S +G +F P Sbjct: 499 LVKRVVERHGGRIWVEST--EGQGSSFYVALP 528 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 21/227 (9%) Query: 30 ELKRSNDELLAFAYVASHDLKSPLRGIGQLANWIREDLVARNSTSIEEHLRMMQQRIARM 89 E +N+ F + SH++++P+ GI L+ + E + S+ ++ + + Sbjct: 340 EADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESGL---SSKQRDYADSIHGATGGL 396 Query: 90 DKLLDDLLLYSRV--GRSHLLMDDINAYELVQQIFDAYLPV-----STFKLHLE-GQYFP 141 ++++D+L +S++ G+ L M + LVQ++ D Y P F LHL+ + Sbjct: 397 VRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLS 456 Query: 142 MRTCQATLEQVLRNLVSNSVKHHDRQHGTITVVICRSGDDLAE------FTVSDDGPGIA 195 + A L+QVL NL+SN++K Q G + + + D+ F ++D G GI+ Sbjct: 457 VVGDPARLKQVLGNLLSNAIKF--TQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGIS 514 Query: 196 PIFHQRVFQMFQTLRPR--DEVEGSGMGLALVKKLVESAGGTIRLRS 240 P Q++F+ F G+G+GLA+ K LVE GGTI +S Sbjct: 515 PEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQS 561 >gi|300314018|ref|YP_003778110.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 492 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 18/220 (8%) Query: 46 SHDLKSPLRGIGQLANWIREDLVARNSTSIEEHLRMMQQRIARMDKLLDDLLLYSRVG-- 103 SH+LK+PL + + A + + + + + S E R+++Q + ++DLL Y+ V Sbjct: 278 SHELKTPLAALCEGAALLDDGVAGQLTDSQREIARILRQNTQSLQTQIEDLLRYNEVSFD 337 Query: 104 --RSHLLMDDINAYELVQQIFD----AYLPVSTFKLHLEGQYFPMRTCQATLEQVLRNLV 157 R H + D+ A L+ ++ D +L K+ +EG + + VL NL+ Sbjct: 338 AQRIHPVPVDLRA--LLHKVIDDQRLQWL-ARELKVEIEGAARTVVVDPEKMAIVLANLL 394 Query: 158 SNSVKHHDRQHGTITVVICRSGDDLAEFTVSDDGPGIAPIFHQRVFQMF-QTL-RPRDEV 215 SN+V+ Q G I ++ + L D GPG+AP R+F+ F Q L +P Sbjct: 395 SNAVRFSP-QGGFIRFLLSEA-PGLVRVECVDQGPGVAPTDAARIFEPFYQGLNQPTAAR 452 Query: 216 EGSGMGLALVKKLVESAGGTIRLRSNAPAERGCTFIFTWP 255 G+G+GL++V++ V++ G + L P E G F P Sbjct: 453 RGNGIGLSVVREYVQAHSGKVYL---VPREGGAHFRIELP 489 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 765,130 Number of extensions: 30422 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 20 Length of query: 264 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 181 Effective length of database: 1,226,865 Effective search space: 222062565 Effective search space used: 222062565 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)