BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0022.p
         (145 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311809|ref|YP_003775901.1| two component response regulato...    86   1e-18
gi|300311026|ref|YP_003775118.1| chemotaxis response regulator r...    56   1e-09
gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [H...    54   5e-09

>gi|300311809|ref|YP_003775901.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score = 85.9 bits (211), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 4/138 (2%)

Query: 8   KEVSLLIVDDDDIDVMGLYRALEKLKVANPCFRAKDGLEALDML----RSGVVPAPSLVL 63
           + V++++V+DDD   + + + L +  + N   R +DG EALD L    RS       +VL
Sbjct: 5   QSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQLVVL 64

Query: 64  LDLNMPRMNGIEFLRELRADKVLTKTVVFVLTTSKAEEDMAMAYERHIAGYMTKSAVDRD 123
           LD+NMPR+NG+E LR L+AD VL+   V +LTT+    ++   YE     Y+TK     D
Sbjct: 65  LDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPVEYED 124

Query: 124 FMTAVGLLEHYWRIVELP 141
           F+ A+  L  + ++V+LP
Sbjct: 125 FIEAIRRLGFFLQVVKLP 142


>gi|300311026|ref|YP_003775118.1| chemotaxis response regulator
           receiver domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 134

 Score = 55.8 bits (133), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 22  VMGLYRALEKLKVANPCFRAKDGLEALDMLRSGVVPAPSLVLLDLNMPRMNGIEFLRELR 81
           ++GL + LE LKV +    A DG  A  +L SG +P  S V+ D NMP M+G+  L+++R
Sbjct: 20  IIGLLKELEYLKVTD----ADDGTSAWKILESGALPI-SFVITDWNMPGMDGLGLLKKIR 74

Query: 82  ADKVLTKTVVFVLTTSKAEEDMAMAYERHIAGYMTK 117
               L +  V +++    +E++ +A E    GY+ K
Sbjct: 75  ETPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVK 110


>gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 133

 Score = 53.9 bits (128), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 9   EVSLLIVDDDDI---DVMGLYRALEKLKVANPCFRAKDGLEALDMLRSGVVPAPSLVLLD 65
           E   L+VDD       V GL + LE  K+      A DG  AL +L SG     + VL D
Sbjct: 5   EQHFLVVDDFSTMRRIVSGLLKELEYTKIV----EADDGSSALKILESGA-SNITFVLTD 59

Query: 66  LNMPRMNGIEFLRELRADKVLTKTVVFVLTTSKAEEDMAMAYERHIAGYMTK 117
            NMP M+G+  L+++R+   L+   V ++T    +E++ MA +    GY+ K
Sbjct: 60  WNMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVK 111


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 363,928
Number of extensions: 11269
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 5
Length of query: 145
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,255,275
Effective search space: 85358700
Effective search space used: 85358700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)