BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0014.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311639|ref|YP_003775731.1| metal ion ABC transporter perme...   324   3e-90
gi|300310326|ref|YP_003774418.1| metal ion ABC transporter perme...   189   1e-49
gi|300310888|ref|YP_003774980.1| metal ion ABC transporter perme...   142   2e-35

>gi|300311639|ref|YP_003775731.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 199

 Score =  324 bits (831), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 182/199 (91%), Positives = 191/199 (95%)

Query: 24  MVGISGALALVAGIPLAVLLIVTAPGGFLASPRVHRVLGSIINGFRATPFIVLLVALIPL 83
           MV +SGALALVAG+PLAVLLIV+APGGFL  PR+HRVLGS+INGFRATPFIVLLVALIPL
Sbjct: 1   MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL 60

Query: 84  TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCKKWDIVRHVY 143
           TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGC+KWDIV HVY
Sbjct: 61  TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY 120

Query: 144 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAVLIL 203
           LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIA+LI+
Sbjct: 121 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIV 180

Query: 204 LVSVVQRIGDGYVRWLRQR 222
           LVS+VQR GD YVR LR R
Sbjct: 181 LVSLVQRTGDSYVRRLRNR 199


>gi|300310326|ref|YP_003774418.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 217

 Score =  189 bits (481), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/222 (53%), Positives = 153/222 (68%), Gaps = 5/222 (2%)

Query: 1   MSLELSLSIPIERYGNALVDTLQMVGISGALALVAGIPLAVLLIVTAPGGFLASPRVHRV 60
           MS EL     I+ + ++  +TL MV ISG +  + GIPL + L +T   G L +   +R+
Sbjct: 1   MSSEL-----IDLFVSSFGETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRI 55

Query: 61  LGSIINGFRATPFIVLLVALIPLTRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREV 120
            G ++N  R+TPFI+LLVA+IP+TR   GT+IG  AAIVPL I+A PF AR+VE +LREV
Sbjct: 56  AGLLVNAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREV 115

Query: 121 DPGLVEAAQALGCKKWDIVRHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDL 180
           D GLVEAAQA+G   W I+  V +PEA  GIV G TIT V+L+  SAMAGA+G GGLGDL
Sbjct: 116 DHGLVEAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDL 175

Query: 181 AIRYGYQRFDTQVMVIVIAVLILLVSVVQRIGDGYVRWLRQR 222
            IRYGYQRF  +VM+ V+ +LI+ V +VQ +GD  VR L  R
Sbjct: 176 GIRYGYQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217


>gi|300310888|ref|YP_003774980.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  142 bits (358), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 69  RATPFIVLLVALIPLTRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAA 128
           R+ PF++LL+ LIP T  + GT++GV  AI PL I   PFFAR+ E  LRE+D G++EA 
Sbjct: 76  RSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLTESVLREIDRGILEAC 135

Query: 129 QALGCKKWDIVRHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQR 188
            A+G ++  I+    LPEALPG++   TIT + L+S +AM+G +G GGLGDLAIRYGYQR
Sbjct: 136 TAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIRYGYQR 195

Query: 189 FDTQVMVIVIAVLILLVSVVQRIGDGYV-RWLRQ 221
           F T+VMV+ +A+L++LV ++Q  GD  V R+ R+
Sbjct: 196 FQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.144    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 648,944
Number of extensions: 25828
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 7
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)