BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0013.p (384 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 562 e-161 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 270 2e-73 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 268 6e-73 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 181 6e-47 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 174 1e-44 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 562 bits (1448), Expect = e-161, Method: Compositional matrix adjust. Identities = 292/388 (75%), Positives = 324/388 (83%), Gaps = 13/388 (3%) Query: 1 MELSITARQSLTAPSRPEAEHDAAAQASAP--GGPWPGSRPKGRVALRQVGKTYLSSAGP 58 MELSITARQSLTAPSRPE + + P GGP G+VALR VGKTY+S+AGP Sbjct: 1 MELSITARQSLTAPSRPEHVREPTVALATPARGGP------HGKVALRGVGKTYVSAAGP 54 Query: 59 VQALQDIELEIAPGSIFGIIGRSGAGKSSLLRTINRLETPSTGRIEVDGVDIATLDDAQL 118 VQALQDI+LEIAPGSIFGIIGRSGAGKSSLLRTINRLE P++GR+EVD VD+ATLD+ QL Sbjct: 55 VQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQL 114 Query: 119 VQX-----MIFQHFNLLSAKTVFDNIALPLRVAGLPRKQVEGSVRELLALVGLEDKADTY 173 V MIFQHFNLL+AKTVFDNIALPLRVAG+PR Q+ V ELLALVGL+DKAD+Y Sbjct: 115 VALRRRIGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKADSY 174 Query: 174 PRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAILQLLRDINRKLGITVILI 233 PRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETT +ILQLLRDINRKLGIT+ILI Sbjct: 175 PRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIILI 234 Query: 234 THEMSVIREIADQVLVLEQGRIAELGPVWQVFGNPAHPATQALLAPLQQGLPPELLDQLQ 293 THEMSVIREIAD+VLVLEQGR+AELG VWQVFG P H AT+ALLAPLQ GLP EL LQ Sbjct: 235 THEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHGLPQELQQALQ 294 Query: 294 TVPPSGPHESILQLQYRGGDGLEPDLLRVAQALGGKTRLLQASVERIQGHTHGQLYIALA 353 P+G HE +LQL++ GGDGL+PDL R+A LGG+ R+LQA V+ IQGHTHGQL +A+A Sbjct: 295 PQAPAGRHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGHTHGQLVLAVA 354 Query: 354 DVTGSPDWQALTQGPTAIAHHIKELGYV 381 D S DW ALTQG AIAHHIKELGYV Sbjct: 355 DAPASHDWLALTQGAQAIAHHIKELGYV 382 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 270 bits (689), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 148/318 (46%), Positives = 206/318 (64%), Gaps = 11/318 (3%) Query: 57 GPVQALQDIELEIAPGSIFGIIGRSGAGKSSLLRTINRLETPSTGRIEVDGVDIATLDDA 116 G V+A++ ++L I G IFGIIGRSGAGKS+L+RT+N L P++GRI +DG D+ +L A Sbjct: 12 GNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSAA 71 Query: 117 QLVQX-----MIFQHFNLLSAKTVFDNIALPLRVAGLPRKQVEGSVRELLALVGLEDKAD 171 QL + MIFQHFNLLS+++V+DNIALPL +AG + ++ V LL LVGL D Sbjct: 72 QLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPLLELVGLTALRD 131 Query: 172 TYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAILQLLRDINRKLGITVI 231 YP ++SGGQKQRVGIARALA+ P++LL DEATSALDPETT +IL+LLR IN++LG+T++ Sbjct: 132 RYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKELGLTIV 191 Query: 232 LITHEMSVIREIADQVLVLEQGRIAELGPVWQVFGNPAHPATQALLA-----PLQQGLPP 286 LITH+M VI++I D+V V+E G++ E G V VF P H T+AL+ L +G+ Sbjct: 192 LITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHELPKGVLA 251 Query: 287 ELLDQLQTVPPSGPHESILQLQYRGGDGLEPDLLRVAQALGGKTRLLQASVERIQGHTHG 346 L ++L + + + + G D +P L + +L ++ IQG G Sbjct: 252 RLRERLARADAGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDEIQGQAFG 311 Query: 347 QLYIALADVTGSPDWQAL 364 L I LA+ T QA+ Sbjct: 312 SLAI-LANGTQDNINQAM 328 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 268 bits (685), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 155/330 (46%), Positives = 208/330 (63%), Gaps = 17/330 (5%) Query: 43 VALRQVGKTYLSSAGPVQALQDIELEIAPGSIFGIIGRSGAGKSSLLRTINRLETPSTGR 102 + + Q+ KTY + + AL+DI L+IA G +FGIIGRSGAGKS+L+RT+N LE P +GR Sbjct: 2 IRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGR 61 Query: 103 IEVDGVDIATLDDAQLVQX-----MIFQHFNLLSAKTVFDNIALPLRVAG-LPRKQVEGS 156 + +DG DI L L+ M+FQHFNLL+AKTV NI PL++ G R++ Sbjct: 62 VLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAAR 121 Query: 157 VRELLALVGLEDKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAIL 216 V ELL LVGL+ D YP +LSGGQKQRVGIARALA+ P +LLCDEATSALDPETT +IL Sbjct: 122 VDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSIL 181 Query: 217 QLLRDINRKLGITVILITHEMSVIREIADQVLVLEQGRIAELGPVWQVFGNPAHPATQAL 276 +LL +INRKLG+T++LITHEM VIR I D+V VL+ G +AE G V +F P H T++L Sbjct: 182 RLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRSL 241 Query: 277 LAPLQQGLPPELLDQLQTVPPSGPHESILQLQYRGGDGLEPDLLRVAQALGGKTRLLQAS 336 L D +++ P +++L Y G +P L ++ A +++ + Sbjct: 242 LT------QSHAWDAGESLYQRRPDGKLVRLTYAGDIAAQPILSQLTAATSALATIVRGT 295 Query: 337 VERIQGHTHGQLYIALADVTGSPDWQALTQ 366 V RI+ +GQL + S D AL Q Sbjct: 296 VSRIKDTPYGQLLVEF-----SGDADALAQ 320 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 181 bits (460), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 149/244 (61%), Gaps = 10/244 (4%) Query: 43 VALRQVGKTYLSSAGPVQALQDIELEIAPGSIFGIIGRSGAGKSSLLRTINRLETPSTGR 102 +A+ V K + G + L+ I L++ PG + IIG+SG+GKS+LLR IN LE+ G Sbjct: 4 IAIDNVKKRF----GDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGN 59 Query: 103 IEVDGVDIAT----LDDAQLVQXMIFQHFNLLSAKTVFDNIAL-PLRVAGLPRKQVEGSV 157 I V G + L + +L MIFQ FNL +V N+ + P+ V G+ + + Sbjct: 60 ISVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTA 119 Query: 158 RELLALVGLEDKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAILQ 217 + L VGL K D YP +LSGGQ+QRV IARAL+ P+ LLCDE TSALDPE + +L Sbjct: 120 KANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLT 179 Query: 218 LLRDINRKLGITVILITHEMSVIREIADQVLVLEQGRIAELGPVWQVFGNPAHPATQALL 277 ++R + ++ G+T++++THEM RE+ ++++ + QG++ E+GP ++FGNP P Q + Sbjct: 180 VMRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFI 238 Query: 278 APLQ 281 Q Sbjct: 239 GMTQ 242 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 143/230 (62%), Gaps = 7/230 (3%) Query: 55 SAGPVQALQDIELEIAPGSIFGIIGRSGAGKSSLLRTINRLETPSTGRIEVDGVDIATLD 114 S G + L + L++ G + IIG+SG+GKS+LLR +N LE G I+V G DI D Sbjct: 13 SFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQVCGHDIHHPD 72 Query: 115 DAQLVQX-----MIFQHFNLLSAKTVFDNIALPLR-VAGLPRKQVEGSVRELLALVGLED 168 L + ++FQ +NL TV NI L L + + +Q + ++L LVGLE+ Sbjct: 73 KLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIAHKVLQLVGLEN 132 Query: 169 KADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAILQLLRDINRKLGI 228 K D YP +LSGGQ QRV IAR+LA PE++L DE TSALDPE T +L+++ D+ R G+ Sbjct: 133 KKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVMEDLARG-GM 191 Query: 229 TVILITHEMSVIREIADQVLVLEQGRIAELGPVWQVFGNPAHPATQALLA 278 T++L+THEM+ R++AD ++ + QG++ E+GP ++F +P Q ++ Sbjct: 192 TMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFVS 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,136,654 Number of extensions: 45788 Number of successful extensions: 575 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 367 Number of HSP's successfully gapped: 148 Length of query: 384 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 297 Effective length of database: 1,207,925 Effective search space: 358753725 Effective search space used: 358753725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)