BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0012.p (326 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 460 e-131 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 146 2e-36 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 139 4e-34 gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 137 1e-33 gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 123 2e-29 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 460 bits (1183), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/267 (85%), Positives = 247/267 (92%), Gaps = 3/267 (1%) Query: 60 FRHLLVV-LTVLSAQAGVAHAADKLRIGVVPGAYGDSIAVAAKEAKSQGIDVQVVEFTDW 118 F HL+ + LTVLS QA A AADKLRIGVVPGAYGDS+AVAAKEAK QGIDVQVVEFTDW Sbjct: 3 FSHLVFLSLTVLSLQA--AQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDW 60 Query: 119 TTPNVAVDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILANVGLYSLKHKTFAQVPQ 178 TTPNVA+DAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGIL+NVGLYSLK+K+ +PQ Sbjct: 61 TTPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQ 120 Query: 179 GGKVGIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLNDIVENPKKLNFVEVEGPQLVR 238 G KVGIANDPVNQGR LLLLQ+VGLIKLKP VGYLGS++DI++NP+KL+FVEVEGPQLVR Sbjct: 121 GAKVGIANDPVNQGRALLLLQNVGLIKLKPKVGYLGSIDDIIDNPRKLSFVEVEGPQLVR 180 Query: 239 ITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTKASRVNDPVIQKFIRIY 298 ITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVT+A+RVNDPV+QKFI+IY Sbjct: 181 ITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTRANRVNDPVVQKFIQIY 240 Query: 299 QNSETVKADIHRAFNSDKRLYTLAWQK 325 QNS V+ADI RAFN D RLYTLAW K Sbjct: 241 QNSAAVRADIGRAFNHDSRLYTLAWLK 267 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/264 (37%), Positives = 142/264 (53%), Gaps = 16/264 (6%) Query: 57 SRLFRHLLVVLTVLSAQAGVAHAADK-LRIGVVPGAYGDSIAVAAK--EAKSQGIDVQVV 113 S L +L L VL+AQA AAD+ +R+GV G + A + E + G V+++ Sbjct: 13 STLMVSMLASL-VLNAQA----AADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKII 67 Query: 114 EFTDWTTPNVAVDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILANVGLYSLKHKTF 173 EF D+ PN A+DAG+LD N +QH+PFL+ I+ GYKL + G ++ + +YS K++ Sbjct: 68 EFNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSRKYRKL 127 Query: 174 AQVPQGGKVGIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLN----DIVENPKKLNFV 229 VP G ++GI NDP N+ R LLLLQ G IKL+ + L N DI ENPKK FV Sbjct: 128 EDVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKFV 187 Query: 230 EVEGPQLVRITPDVDLAQGYPHFIVAAKA-FDPSSGLAYSGIEDARFAIQFVTKASRVND 288 E++ QL R D+D + + AAKA +P+ D+ +A + Sbjct: 188 EIDAAQLPRTLDDLDASAVNADY--AAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQ 245 Query: 289 PVIQKFIRIYQNSETVKADIHRAF 312 P + K ++ YQ+ E VK I F Sbjct: 246 PWLGKLVQAYQSPE-VKRYIETEF 268 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 139 bits (349), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 5/249 (2%) Query: 61 RHLLVVLTVLSAQAGV----AHAADKLRIGVVPGAYGDSIAVAAKEAKSQGIDVQVVEFT 116 R L+ + L AG+ A A D++++GV G + + + K + G+ ++V+EFT Sbjct: 4 RQLIQFIAGLGLAAGLVSAPAFAQDQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKVIEFT 63 Query: 117 DWTTPNVAVDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILANVGLYSLKHKTFAQV 176 D+ PN A+ AGDLD N +QHQP+LD I+ GYK S G+ I +G+YS K K+ + Sbjct: 64 DYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSLNDL 123 Query: 177 PQGGKVGIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLNDIVENPKKLNFVEVEGPQL 236 QG +VG+ NDP N GR LL+LQ+ G+IKLK + G + DIVENPKK+ VE++ QL Sbjct: 124 KQGARVGVPNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELDAAQL 183 Query: 237 VRITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTKASRVNDPVIQKFIR 296 R D D A ++ +A P+ +A + + + P + K ++ Sbjct: 184 PRSLDDFDAAVINGNYAESA-GLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAKLVK 242 Query: 297 IYQNSETVK 305 Y + E K Sbjct: 243 AYHSPEVKK 251 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 137 bits (344), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 132/241 (54%), Gaps = 8/241 (3%) Query: 70 LSAQAGVAHAADKLRIGVVPGAYGDSIAVAAKEAKSQGIDVQVVEFTDWTTPNVAVDAGD 129 L Q G A K+++G+ G+ V K A G+++Q V F+D+ PN A+ AGD Sbjct: 23 LVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFSDYLQPNAALAAGD 82 Query: 130 LDLNYFQHQPFLDNAIQKNGYKLASAGTGILANVGLYSLKHKTFAQVPQGGKVGIANDPV 189 LD N FQH+P+L++ I GY++ G I A +G+YS K ++ Q+PQG +GI NDP Sbjct: 83 LDANAFQHRPYLESQIAARGYRIVPVGLTITAPLGIYSRKFRSVEQLPQGAAIGIQNDPS 142 Query: 190 NQGRGLLLLQSVGLIKLKPNVGYLG---SLNDIVENPKKLNFVEVEGPQLVRITPDVDLA 246 N R LLLLQ GLI+LKP VG G + D++ENP+KL VE++ QL R D+ A Sbjct: 143 NGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPRKLKLVELDAAQLPRSLDDLAAA 202 Query: 247 QGYPHFIVAAKAFDPSSGLAYSGIED--ARFAIQFVTKASRVNDPVIQKFIRIYQNSETV 304 + A +A +ED R+A T+A + P ++K ++ Y + E Sbjct: 203 SINNDYAFKAGLSLQKDTIA---VEDPRGRYANIIATRAEDKDRPWVRKLVQAYHSEEVR 259 Query: 305 K 305 K Sbjct: 260 K 260 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 117/240 (48%), Gaps = 9/240 (3%) Query: 77 AHAADKLRIGVVPGAYGDSIAVAAKEAKSQGIDVQVVEFTDWTTPNVAVDAGDLDLNYFQ 136 AHAADKL I P + + + +GID+QV FTD+ P + +D N+F Sbjct: 21 AHAADKLVIAATPVPHAEILEHIKPALAKEGIDLQVKVFTDYVQPAAQTNEKQVDGNFFL 80 Query: 137 HQPFLD--NAIQKNGYKLASAGTGILANVGLYSLKHKTFAQVPQGGKVGIANDPVNQGRG 194 HQP+LD KN ++ A + YS K+K A +P G + I NDP N GR Sbjct: 81 HQPYLDQFKKSHKNDIEVPVAKVHV-EPFAAYSQKYKKIADIPNGATIAIPNDPSNSGRA 139 Query: 195 LLLLQSVGLIKLKPNVGYLGSLNDIVENPKKLNFVEVEGPQLVRITPDVDLAQGYPHFIV 254 LLLL GLIKLK N + DIVENPKKL F +E L R+ VD+A ++ + Sbjct: 140 LLLLARNGLIKLKDNTNISATQKDIVENPKKLKFRALEAATLPRVLNQVDVALINTNYAL 199 Query: 255 AAKAFDPSSGLAYSGIEDAR--FAIQFVTKASRVNDPVIQKFIRIYQNSETVKADIHRAF 312 AK +P + IEDA +A V + + P I+K NS VK I + Sbjct: 200 EAK-LNPVKDSLF--IEDANSPYANLLVAREDNKDSPAIKKLAAAL-NSPDVKKFIEEKY 255 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 991,099 Number of extensions: 41973 Number of successful extensions: 126 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 5 Length of query: 326 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 241 Effective length of database: 1,217,395 Effective search space: 293392195 Effective search space used: 293392195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)