BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0004.p (519 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily prot... 452 e-128 gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294... 380 e-106 >gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 452 bits (1164), Expect = e-128, Method: Compositional matrix adjust. Identities = 237/519 (45%), Positives = 337/519 (64%), Gaps = 6/519 (1%) Query: 1 MAARNDLAILKAARTGAADAQLALGKRYYLGSGSLPQSVETAFYWLERAARQGLSDAWKM 60 MA R +LA++KAAR G + AQLALG+RY G LP+S TAFYWL RAA+QG+ DAW + Sbjct: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 Query: 61 IGRAVPYELVLTMSRPYEAAIWYERAFDSGEFKAGVVFSKLVLEHPQQFTERIKYKAVTV 120 IGR + YE V +S P EAA+WYE+AF++G +AG++F++LVL++ +F +A+ Sbjct: 61 IGRNITYEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDNTSEFDSNTHARAIAA 120 Query: 121 LKQLAERNDHEAQWLLAKHLAHVEVQHGSSEESGGTLTHQKSGAKDHWIKQAALAGVTEA 180 L LA R+DHEAQWLLA+ + +HG G +D + +AA AG+ EA Sbjct: 121 LSLLASRDDHEAQWLLAQQMQ----RHGQPMLPGAAAA--SPAYEDKLMLEAARAGIEEA 174 Query: 181 QFSLLEKNWTVGDYDSFFENSVSLVERIYKEKEYQLRKIRDVTPSSPPFSLTKDEARLLL 240 Q+++L+K W GD SF + + +R+ + ++ L+ +EA LLL Sbjct: 175 QYAVLDKAWQQGDEASFARGAQRVTQRLLARHANAVAQLEKDGQIHGAVQLSDEEATLLL 234 Query: 241 RHSQILLQHPTPDIAYSQRLLELAALSQCEEAQYRLGMLHARINHDCERVFPDYGQANYL 300 R+ Q L+ +PD Q L ELAA+ +A LG+L A+I+ ER+F ++G AN+ Sbjct: 235 RYGQWRLRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFMEHGLANFK 294 Query: 301 AAVPWLNVAGERGLAEAWHALSMIFSKAEYYQRNLPLARQHLKRSAEMGFAVAQFEYAQY 360 A+ WL AGE G+A+ WHAL+ I+S++ Y QRNL +A+ +L+++A+ G AQ E AQ Sbjct: 295 KALHWLERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVEAQCELAQV 354 Query: 361 LWRTRRDDPMYDIRALFWWKKSTDQGHRKAQLVSTAFSSEASGETFATEIAKALTPRLRA 420 WR RRDDP+ D++AL+WW+++ QG AQ AF+++ + +A + LT +LR Sbjct: 355 CWRHRRDDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQALLTDKLRN 414 Query: 421 AYPFLSARLDLAAAFNLSKAEALLIDVRRADYGHCLEVDISSYHGRSKRRLILVESDKQR 480 + PFLSAR++LAA F L+K EALLID++ ADYGHCL VDI ++H RSKRRLI V++D QR Sbjct: 415 SSPFLSARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLIAVQTDAQR 474 Query: 481 ISLNLISRLFTDVDASFEGPEGNYRQRQYRLKTVLSELN 519 +LN +SRLF DVD F+G EGNYRQRQYRL+T L Sbjct: 475 ATLNRVSRLFGDVDCGFDGLEGNYRQRQYRLRTTFPGLG 513 >gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294 [Herbaspirillum seropedicae SmR1] Length = 532 Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/518 (44%), Positives = 319/518 (61%), Gaps = 2/518 (0%) Query: 1 MAARNDLAILKAARTGAADAQLALGKRYYLGSGSLPQSVETAFYWLERAARQGLSDAWKM 60 MA R DLAI++AAR G A AQL LGKRY G LPQS+ TAF+WLERAARQ L+DAW + Sbjct: 1 MANREDLAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWML 60 Query: 61 IGRAVPYELVLTMSRPYEAAIWYERAFDSGEFKAGVVFSKLVLEHPQQFTERIKYKAVTV 120 I +PYE+V+T++RP EAA WYERAF+ G KAG+ F++LVLE + +K +A+ V Sbjct: 61 IAEHIPYEVVVTLTRPQEAAQWYERAFEGGMTKAGLAFARLVLESAGEPGAELKARAIRV 120 Query: 121 LKQLAERNDHEAQWLLAKHLAHVEVQHGSSEESGGTLTHQKSGAK-DHWIKQAALAGVTE 179 L+ +A D +AQWLLA+ + S+ + W ++AA AG+ + Sbjct: 121 LQVVAREGDPDAQWLLARQGSQPAEPAASAAVAAPAPAPDLPPEDLQQWTQKAADAGIEQ 180 Query: 180 AQFSLLEKNWTVGDYDSFFENSVSLVERIYKEKEYQLRKIRDVTPSSPPFSLTKDEARLL 239 AQ +L + W D F + + L +++ ++ E + ++ + + +L LL Sbjct: 181 AQHALADAAWQQADLIQFRQRAQPLADKLLRQYEALVAQL-NGPAEALATALGPQNIVLL 239 Query: 240 LRHSQILLQHPTPDIAYSQRLLELAALSQCEEAQYRLGMLHARINHDCERVFPDYGQANY 299 R +Q+ L D+ +Q+LLELAAL+ +AQ LG+L+ R++ R FP G ANY Sbjct: 240 RRLAQVHLGEKRADLQQAQQLLELAALACDRDAQLALGLLYGRVDEQGVRCFPGLGSANY 299 Query: 300 LAAVPWLNVAGERGLAEAWHALSMIFSKAEYYQRNLPLARQHLKRSAEMGFAVAQFEYAQ 359 A+ WL +AGE+G+A AW+ LS I+ K E+ QRNL + +L+R+AEMG AQ E Sbjct: 300 KKAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVAAQLECGI 359 Query: 360 YLWRTRRDDPMYDIRALFWWKKSTDQGHRKAQLVSTAFSSEASGETFATEIAKALTPRLR 419 WR RRD+ D+RAL+W +K+ QG +AQ + + +A LT Sbjct: 360 GAWRNRRDEAGNDVRALYWLQKAASQGDEQAQALLDKVADRPQAAAWAVLARAQLTREQV 419 Query: 420 AAYPFLSARLDLAAAFNLSKAEALLIDVRRADYGHCLEVDISSYHGRSKRRLILVESDKQ 479 A+PFL+AR++LA F L++ EALLID+++AD GHCL VDI S + RSKRRLI+VE+ +Q Sbjct: 420 NAHPFLAARIELATLFGLTRPEALLIDLKQADRGHCLMVDIRSQYARSKRRLIMVENGEQ 479 Query: 480 RISLNLISRLFTDVDASFEGPEGNYRQRQYRLKTVLSE 517 R +LN I RLF DVD GPEGNYRQR YRLKTVL + Sbjct: 480 RGALNRIGRLFEDVDCGPSGPEGNYRQRLYRLKTVLPQ 517 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,597,979 Number of extensions: 65068 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 2 Length of query: 519 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 430 Effective length of database: 1,198,455 Effective search space: 515335650 Effective search space used: 515335650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)