BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0258.p
         (98 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309943|ref|YP_003774035.1| ferric uptake regulator protein...   158   1e-40

>gi|300309943|ref|YP_003774035.1| ferric uptake regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score =  158 bits (399), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/76 (98%), Positives = 76/76 (100%)

Query: 23  GLLQRNHFETGKAVFELNEGSHHDHLVCLDCGKVEEFFDAEIEKRQLKIAQEHGFEIADH 82
           GLLQRNHFETGKAVFELNEGSHHDHLVCLDCGKVEEFFDAEIEKRQLKIAQEHGFEIADH
Sbjct: 66  GLLQRNHFETGKAVFELNEGSHHDHLVCLDCGKVEEFFDAEIEKRQLKIAQEHGFEIADH 125

Query: 83  ALALYGHCKNCKKVKK 98
           ALALYGHCKNCKK+KK
Sbjct: 126 ALALYGHCKNCKKLKK 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 253,836
Number of extensions: 7538
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 98
Length of database: 1,619,870
Length adjustment: 67
Effective length of query: 31
Effective length of database: 1,302,625
Effective search space: 40381375
Effective search space used: 40381375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)