BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0257.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309944|ref|YP_003774036.1| heat-inducible transcription re...   524   e-150

>gi|300309944|ref|YP_003774036.1| heat-inducible transcription
           repressor transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  524 bits (1350), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/265 (98%), Positives = 264/265 (99%)

Query: 1   MFVDTLLTVEAIDESALEGRLQARLQHSGSPQKIITNAAQVLSSLSQFAGVVMTPKRESM 60
           MFVDTLLTVEAIDESALEGRLQARLQHS SPQKIITNAAQVLSSLSQFAGVVMTPKRES+
Sbjct: 74  MFVDTLLTVEAIDESALEGRLQARLQHSTSPQKIITNAAQVLSSLSQFAGVVMTPKRESV 133

Query: 61  FQQIEFLRLSEKRILLVIVDQGGDVQNRMLLTDVDYTPSQLTQAANYINQHYAGQSFDQV 120
           FQQIEFLRLSEKRILLVIVDQGGDVQNRMLLT+VDYTPSQLTQAANYINQHYAGQSFDQV
Sbjct: 134 FQQIEFLRLSEKRILLVIVDQGGDVQNRMLLTEVDYTPSQLTQAANYINQHYAGQSFDQV 193

Query: 121 RIHLQGELRQLRDDMTALMQAAVEAGSDAMNEEADNNVVISGERNLLSVTDLSSNMNSLR 180
           R+HLQGELRQLRDDMTALMQAAVEAGSDAM+EEADNNVVISGERNLLSVTDLSSNMNSLR
Sbjct: 194 RMHLQGELRQLRDDMTALMQAAVEAGSDAMSEEADNNVVISGERNLLSVTDLSSNMNSLR 253

Query: 181 RLFDMFEQKTGLLQLLDVSSKATGVQIFIGGESQLVPMDDMSIVTAPYEVNGRIVGTLGV 240
           RLFDMFEQKTGLLQLLDVSSKATGVQIFIGGESQLVPMDDMSIVTAPYEVNGRIVGTLGV
Sbjct: 254 RLFDMFEQKTGLLQLLDVSSKATGVQIFIGGESQLVPMDDMSIVTAPYEVNGRIVGTLGV 313

Query: 241 IGPTRMAYERVIPIVDITAKLLSSA 265
           IGPTRMAYERVIPIVDITAKLLSSA
Sbjct: 314 IGPTRMAYERVIPIVDITAKLLSSA 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 785,611
Number of extensions: 29717
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)