BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0254.p
         (144 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspiril...   200   4e-53

>gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspirillum
           seropedicae SmR1]
          Length = 548

 Score =  200 bits (508), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/124 (79%), Positives = 107/124 (86%)

Query: 1   VIVDAIELEFARGFSVFTGETGAGKSILIDALALAMGGRGDPSVVREGAAKADVSADFTA 60
           VIVDAIELEFARGFSVFTGETGAGKSILIDALALA+GGRGDPSVVREGAAKADVSADF+A
Sbjct: 11  VIVDAIELEFARGFSVFTGETGAGKSILIDALALALGGRGDPSVVREGAAKADVSADFSA 70

Query: 61  TPEVMAWLDEHEFSGEHDGVLLRRVIDNAGRSKAYINGSAATAAXIPDESRCPAPVAGQP 120
           TPEV AWL+EHEF+ EH GVLLRRVIDNAGRSKAYINGSAATAA + +       + GQ 
Sbjct: 71  TPEVQAWLEEHEFADEHGGVLLRRVIDNAGRSKAYINGSAATAAQLREVGEMLVDIHGQH 130

Query: 121 GRSA 124
              +
Sbjct: 131 AHQS 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 545,797
Number of extensions: 23993
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,255,275
Effective search space: 84103425
Effective search space used: 84103425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)