BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0251.p
         (369 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum ...   678   0.0  

>gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/367 (89%), Positives = 348/367 (94%)

Query: 1   MPFRKEPPYTHGSPASTAVVLVNLGTPDAPNAGALRRYLKQFLSDPRVVEIPRAVWWFIL 60
           M FR EP +THGS ASTA+VLVNLGTPDAPNA ALRRYL QFLSDPRVVEIPRAVWWFIL
Sbjct: 1   MAFRTEPKHTHGSSASTAIVLVNLGTPDAPNAPALRRYLGQFLSDPRVVEIPRAVWWFIL 60

Query: 61  NGIILPFRSSKSAEKYASIWTEEGSPLRVHTQRQAAALAVQLAGRGHHQLQVVYAMRYGT 120
           NG+ILPFRSSKSAEKYASIWTE+GSPLRVHT+RQAAAL  QLA RGHHQLQVV+AMRYG+
Sbjct: 61  NGVILPFRSSKSAEKYASIWTEQGSPLRVHTERQAAALGAQLAARGHHQLQVVHAMRYGS 120

Query: 121 PSLPEVLDQLKQQGCTRILVLPAYPQYSGTTTASIFDAVFDHYRQVRNIPELRLIRNYHD 180
           PSLP+VLDQLKQQGCTRILVLPAYPQYSGTTTASIFDAVFDHYR+VRNIPELRLIRNYHD
Sbjct: 121 PSLPQVLDQLKQQGCTRILVLPAYPQYSGTTTASIFDAVFDHYRKVRNIPELRLIRNYHD 180

Query: 181 QDAYIQALRQSVLDHWDLHGRPDKLLMSFHGVPKRTLMLGDPYHCECYKTARLLAESLGL 240
           QD YIQALRQSVLDHW+++GRPDKL+MSFHGVPKRTL LGDPYHCECYKTARLLA+SLGL
Sbjct: 181 QDGYIQALRQSVLDHWEVNGRPDKLVMSFHGVPKRTLELGDPYHCECYKTARLLAQSLGL 240

Query: 241 TDEQYQVTFQSRFGKAEWLQPYTAPTAQELGRQGVRRIDVMCPGFTSDCLETLEEIAMEV 300
            DEQY VTFQSRFGKAEWLQPYTAPT Q LGRQGVRRIDVMCPGFTSDCLETLEEIAMEV
Sbjct: 241 NDEQYLVTFQSRFGKAEWLQPYTAPTVQALGRQGVRRIDVMCPGFTSDCLETLEEIAMEV 300

Query: 301 KEDFLHAGGKEFHFIPCLNESPVWINGMVEIVEQHLAGWPTMSNAAAREEMARQQAIAAE 360
           K++FLHAGGKEFHFIPCLNESP WI GMVEIVEQHLAGWPTMSNAAARE+MA+  AI+AE
Sbjct: 301 KDEFLHAGGKEFHFIPCLNESPAWIAGMVEIVEQHLAGWPTMSNAAAREQMAQDAAISAE 360

Query: 361 RAKALGA 367
           RAKALGA
Sbjct: 361 RAKALGA 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,129,327
Number of extensions: 45060
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,207,925
Effective search space: 340634850
Effective search space used: 340634850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)