BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0247.p
         (376 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309951|ref|YP_003774043.1| molecular chaperone protein [He...   688   0.0  

>gi|300309951|ref|YP_003774043.1| molecular chaperone protein
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/376 (98%), Positives = 371/376 (98%), Gaps = 1/376 (0%)

Query: 1   MAKRDFYEVLGLAKNASDDEIKKAYRKLAMKYHPDRNPDSKGAEDKFKEVKEAYEMLSDP 60
           MAKRDFYEVLGLAKNASDDEIKKAYRKLAMKYHPDRNPDSKGAEDKFKEVKEAYEMLSDP
Sbjct: 1   MAKRDFYEVLGLAKNASDDEIKKAYRKLAMKYHPDRNPDSKGAEDKFKEVKEAYEMLSDP 60

Query: 61  QKREAYDRYGHAGVDPNMGGGGGAGAGGFADAFGDIFGDIFGGGGGGRGRSSGPQVYRGA 120
           QKREAYDRYGHAGVDPNMG GGGAGAGGFADAFGDIFGDI  GGGGGRGRS+GPQVYRGA
Sbjct: 61  QKREAYDRYGHAGVDPNMGAGGGAGAGGFADAFGDIFGDI-FGGGGGRGRSAGPQVYRGA 119

Query: 121 DLRYNLEITLEQAAHGFDTTIRVPSWDQCDTCHGSGAKPGTSPVTCTTCGGHGQVRMQQG 180
           DLRYNLEITLEQAAHGFDTTIRVPSWDQCDTCHGSGAKPGTSPVTCTTCGGHGQVRMQQG
Sbjct: 120 DLRYNLEITLEQAAHGFDTTIRVPSWDQCDTCHGSGAKPGTSPVTCTTCGGHGQVRMQQG 179

Query: 181 FFSIQQTCPKCHGSGKIIPEPCTTCAGAGRIKRNKTLEVKIPEGIDDGMRIRSSGNGEPG 240
           FFSIQQTCPKCHGSGKIIPEPC TCAGAGRIKRNKTLEVKIPEGIDDGMRIRSSGNGEPG
Sbjct: 180 FFSIQQTCPKCHGSGKIIPEPCPTCAGAGRIKRNKTLEVKIPEGIDDGMRIRSSGNGEPG 239

Query: 241 VNGGPPGDLYVEIHIKPHDVFQRDGDDLHCEMPISFAKAALGGEIEAPTLNGKASFSIPE 300
           VNGGPPGDLYVEIHIKPHDVFQRDGDDLHCEMPISFAKAALGGEIEAPTLNGKASFSIPE
Sbjct: 240 VNGGPPGDLYVEIHIKPHDVFQRDGDDLHCEMPISFAKAALGGEIEAPTLNGKASFSIPE 299

Query: 301 GTQSGKTFRLRGKGIKGVRSGYAGDLFCHVVVETPVKLTDRQKELLREFEQLTTEGGAKH 360
           GTQSGKTFRLRGKGIKGVRSGY GDLFCHVVVETPVKLT+RQKELLREFEQLTTEGGAKH
Sbjct: 300 GTQSGKTFRLRGKGIKGVRSGYPGDLFCHVVVETPVKLTERQKELLREFEQLTTEGGAKH 359

Query: 361 SPQTKTWKDKVKEFFE 376
           SPQTKTWKDKVKEFFE
Sbjct: 360 SPQTKTWKDKVKEFFE 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,086,607
Number of extensions: 42653
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,207,925
Effective search space: 349090325
Effective search space used: 349090325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)