BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0245.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309953|ref|YP_003774045.1| deoxynucleoside kinase [Herbasp...   396   e-112

>gi|300309953|ref|YP_003774045.1| deoxynucleoside kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  396 bits (1017), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/213 (90%), Positives = 202/213 (94%)

Query: 1   MELESYRYIAIDGPIGAGKTSLATRLSALWGAQAVLEQPEGNPFLAEFYRDAARHAFQTQ 60
           MELESYRYIAIDGPIGAGKTSLATRL+ LWGAQA+LEQPEGNPFLAEFYRDAARHAFQTQ
Sbjct: 1   MELESYRYIAIDGPIGAGKTSLATRLATLWGAQALLEQPEGNPFLAEFYRDAARHAFQTQ 60

Query: 61  VFFLLQRMGQLQAPLDPAQLEGRFIADFMLEKNILFAQLTLAGDELALYDALYRQLQPKA 120
            FFLLQRMGQLQAPLDPA  EGRFIADFMLEKNILFAQLTLAGDELALYDAL+RQLQP+ 
Sbjct: 61  AFFLLQRMGQLQAPLDPALAEGRFIADFMLEKNILFAQLTLAGDELALYDALHRQLQPQV 120

Query: 121 RVPDLVIHLQAPADVLQTRITTRGIAMEEAISLDYLQRLSECYSQFFYHYQDAPVLTVNT 180
           R+PDLVIHLQAP +VLQ RI  RGIAME+AISLDYLQRLSECYS FFYHY+DAPVLTVNT
Sbjct: 121 RIPDLVIHLQAPPEVLQARIGARGIAMEQAISLDYLQRLSECYSHFFYHYEDAPVLTVNT 180

Query: 181 EHLDPAHSDADLAILLQHIEQMHGPRAFLNHGG 213
           EHLDPAH+DADLAILLQHI+QMHG RAFLNHGG
Sbjct: 181 EHLDPAHNDADLAILLQHIQQMHGKRAFLNHGG 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 671,154
Number of extensions: 27276
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)