BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0244.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310514|ref|YP_003774606.1| stearoyl-CoA desaturase oxidore...   271   5e-74
gi|300309954|ref|YP_003774046.1| methyl-accepting chemotaxis pro...   149   3e-37

>gi|300310514|ref|YP_003774606.1| stearoyl-CoA desaturase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 398

 Score =  271 bits (693), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 136/150 (90%), Positives = 142/150 (94%), Gaps = 1/150 (0%)

Query: 166 GMLASRQVL-VTKFDSQKSVIDFDTLQSVIANRYDVTAKYARSLKSAWKDELDHLIEKAQ 224
           G+   ++VL V KFD QK+VIDF+TLQSVIANRYDVTAKYARSLKSAWKDELDHLIEKA+
Sbjct: 247 GLAKVKKVLPVPKFDRQKAVIDFETLQSVIANRYDVTAKYARSLKSAWKDELDHLIEKAK 306

Query: 225 LESRFLKSSKKLLQREPTRLEDGQKQQLSELFAHSKALQTMHEMRIELSAIWERSHSTRE 284
           LESRFLKSSKKLLQREP RLEDGQKQQLSELFAHSKALQTMHEMRIELSAIWERSHSTRE
Sbjct: 307 LESRFLKSSKKLLQREPGRLEDGQKQQLSELFAHSKALQTMHEMRIELSAIWERSHSTRE 366

Query: 285 QLLQQLQDWCTRAEASGVKALRDFALRLRS 314
           QLLQQLQDWC RAEASGVKALRDFALRLRS
Sbjct: 367 QLLQQLQDWCARAEASGVKALRDFALRLRS 396


>gi|300309954|ref|YP_003774046.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 301

 Score =  149 bits (376), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/87 (81%), Positives = 78/87 (89%)

Query: 94  LVREVLPVWQGNVQLARAQTQSAIDGLTARFVGIHERLGGALDPARHSANGEILQTVQHA 153
           L+REVLPVWQGNVQLARAQTQSAID LTARFVGIHERL G LDPARH A GEILQTVQHA
Sbjct: 21  LLREVLPVWQGNVQLARAQTQSAIDSLTARFVGIHERLEGTLDPARHGAGGEILQTVQHA 80

Query: 154 AEQLGAIASALEGMLASRQVLVTKFDS 180
           A+QLG IA+ALEGML+SRQ L ++ D+
Sbjct: 81  ADQLGGIATALEGMLSSRQALASRLDT 107


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 689,554
Number of extensions: 23462
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)