BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0242.p (117 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309955|ref|YP_003774047.1| two-component system sensor his... 221 2e-59 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 119 8e-29 gi|300311034|ref|YP_003775126.1| chemotaxis response regulator p... 101 1e-23 gi|300311785|ref|YP_003775877.1| chemotaxis response regulator C... 92 1e-20 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 89 7e-20 >gi|300309955|ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 221 bits (562), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 107/117 (91%), Positives = 111/117 (94%) Query: 1 LIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGRKFNLVISDLNMPNLDGLSFV 60 LIVDDSFSLRQTI+AALKSAGY VEEAADG +AL LDGRKFNLVISDLNMP+LDGLSFV Sbjct: 6 LIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLDGLSFV 65 Query: 61 REMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLVQP 117 REMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPF PPVLLDAVAKL+ P Sbjct: 66 REMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLILP 122 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 119 bits (297), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 55/115 (47%), Positives = 81/115 (70%) Query: 1 LIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGRKFNLVISDLNMPNLDGLSFV 60 L VDDS SLRQ + +LK+AGY V EA DG++AL+K + F+LV++D NMP +DGL+ + Sbjct: 6 LAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLI 65 Query: 61 REMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLV 115 R ++++ +Y P++MLTTE S+ K +GKAAG W+ KPF P L + V K++ Sbjct: 66 RSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 >gi|300311034|ref|YP_003775126.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 126 Score = 101 bits (252), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 72/102 (70%), Gaps = 1/102 (0%) Query: 1 LIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLD-GRKFNLVISDLNMPNLDGLSF 59 +VDDS ++ ++ + L+ AG+ V+ A DG++ALKK+ G K +L+I+D+NMPN+DGL Sbjct: 8 FLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMDGLEL 67 Query: 60 VREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKP 101 +R ++ +P ++F P++ LTTES ++ EGK AG W+ KP Sbjct: 68 IRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKP 109 >gi|300311785|ref|YP_003775877.1| chemotaxis response regulator CheY [Herbaspirillum seropedicae SmR1] Length = 122 Score = 92.0 bits (227), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 1/116 (0%) Query: 1 LIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGR-KFNLVISDLNMPNLDGLSF 59 L+VDDS ++R + LK G V A DG + L KL G LV+SD+NMPN+DGL+ Sbjct: 5 LVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLTM 64 Query: 60 VREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLV 115 +++ +IMLTTE+S K+ GKAAGI+ W+ KPF +L KLV Sbjct: 65 AEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 89.4 bits (220), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Query: 1 LIVDDSFSLRQTITAALKSAGY-QVEEAADGLEALKKLDGRKFNLVISDLNMPNLDGLSF 59 L+VDD ++R+ + LK GY V+EA DG++AL+KL +F+ V+SD NMPN+DGL+ Sbjct: 9 LVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLTM 68 Query: 60 VREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLVQ 116 ++E+++ PA PV+M+T E+ + AG +V KPF L + + K+ + Sbjct: 69 LQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFE 125 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 326,012 Number of extensions: 11075 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 31 Length of query: 117 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 43 Effective length of database: 1,269,480 Effective search space: 54587640 Effective search space used: 54587640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)